{ "type": "genome", "identifier": "GCF_004216755.1", "organism": "Kerstersia gyiorum", "title": "Kerstersia gyiorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004216755.1", "bioproject": "PRJNA224116", "biosample": "SAMN10866379", "wgs_master": "SGWZ00000000.1", "refseq_category": "reference genome", "taxid": "206506", "species_taxid": "206506", "organism_name": "Kerstersia gyiorum", "infraspecific_name": "strain=DSM 16618", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/20", "asm_name": "ASM421675v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004216755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/216/755/GCF_004216755.1_ASM421675v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3982678", "genome_size_ungapped": "3982388", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004216755.1-RS_2024_04_10", "annotation_date": "2024-04-10", "total_gene_count": "3518", "protein_coding_gene_count": "3412", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-20", "dateModified": "2019-02-20", "datePublished": "2019-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Kerstersia gyiorum" ], "sample_taxid": [ "206506" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.108 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3982678", "Number of Sequences": "9", "Longest Sequences (bp)": "1431133", "N50 (bp)": "801770", "Gap Ratio (%)": "0.007282", "GCcontent (%)": "62.4", "Number of CDSs": "3474", "Average Protein Length": "336.4", "Coding Ratio (%)": "88.0", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kerstersia gyiorum", "strain": "strain=DSM 16618", "accession": "GCA_004216755.1", "taxid": 206506, "species_taxid": 206506, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1323, "total_fragments": 1325, "ani_threshold": 95, "status": 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"strain=NBRC 13691", "accession": "GCA_001598655.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5284, "matched_fragments": 364, "total_fragments": 1325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=LMG 1231", "accession": "GCA_902859715.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 78.5187, "matched_fragments": 400, "total_fragments": 1325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter veterisilvae", "strain": "strain=LMG 30378", "accession": "GCA_900496975.1", "taxid": 2069367, "species_taxid": 2069367, "relation_to_type": "type", "validated": true, "ani": 78.4956, "matched_fragments": 401, "total_fragments": 1325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter animicus", "strain": "strain=LMG 26690", "accession": 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"ani": 77.1381, "matched_fragments": 195, "total_fragments": 1325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 76.984, "matched_fragments": 194, "total_fragments": 1325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 76.6921, "matched_fragments": 212, "total_fragments": 1325, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004216755.1", "gtdb_species": "s__Kerstersia gyiorum", "ani": 100.0, "matched_fragments": 1323, "total_fragments": 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