{ "type": "genome", "identifier": "GCF_004217135.1", "organism": "Micromonospora violae", "title": "Micromonospora violae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004217135.1", "bioproject": "PRJNA224116", "biosample": "SAMN10865970", "wgs_master": "SHKK00000000.1", "refseq_category": "reference genome", "taxid": "1278207", "species_taxid": "1278207", "organism_name": "Micromonospora violae", "infraspecific_name": "strain=DSM 45888", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/20", "asm_name": "ASM421713v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004217135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/217/135/GCF_004217135.1_ASM421713v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7139733", "genome_size_ungapped": "7139733", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004217135.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "6513", "protein_coding_gene_count": "6353", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-20", "dateModified": "2019-02-20", "datePublished": "2019-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora violae" ], "sample_taxid": [ "1278207" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.909 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7139733", "Number of Sequences": "1", "Longest Sequences (bp)": "7139733", "N50 (bp)": "7139733", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.1", "Number of CDSs": "6552", "Average Protein Length": "326.4", "Coding Ratio (%)": "89.9", "Number of rRNAs": "9", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora violae", "strain": "strain=DSM 45888", "accession": "GCA_004217135.1", "taxid": 1278207, "species_taxid": 1278207, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2379, "total_fragments": 2379, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Micromonospora saelicesensis", "strain": "strain=DSM 44871", "accession": "GCA_900091575.1", "taxid": 285676, "species_taxid": 285676, "relation_to_type": "type", "validated": true, "ani": 92.5431, "matched_fragments": 1941, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora vinacea", "strain": "strain=DSM 101695", "accession": "GCA_015751785.1", "taxid": 709878, "species_taxid": 709878, "relation_to_type": "type", "validated": true, "ani": 92.5032, "matched_fragments": 1976, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora noduli", "strain": "strain=GUI43", "accession": "GCA_003264365.1", "taxid": 709876, "species_taxid": 709876, "relation_to_type": "type", "validated": true, "ani": 92.4896, "matched_fragments": 1872, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora arida", "strain": "strain=LB32", "accession": "GCA_003857035.1", "taxid": 2203715, "species_taxid": 2203715, "relation_to_type": "type", "validated": true, "ani": 92.4508, "matched_fragments": 1745, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ureilytica", "strain": "strain=DSM 101692", "accession": "GCA_015751765.1", "taxid": 709868, "species_taxid": 709868, "relation_to_type": "type", "validated": true, "ani": 92.4169, "matched_fragments": 1877, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inaquosa", "strain": "strain=LB39", "accession": "GCA_003857055.1", "taxid": 2203716, "species_taxid": 2203716, "relation_to_type": "type", "validated": true, "ani": 92.3067, "matched_fragments": 1764, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora jinlongensis", "strain": "strain=DSM 45876", "accession": "GCA_013410645.1", "taxid": 1287877, "species_taxid": 1287877, "relation_to_type": "type", "validated": true, "ani": 90.2778, "matched_fragments": 1792, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora taraxaci", "strain": "strain=DSM 45885", "accession": "GCA_007830095.1", "taxid": 1316803, "species_taxid": 1316803, "relation_to_type": "type", "validated": true, "ani": 89.9065, "matched_fragments": 1913, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chokoriensis", "strain": "strain=DSM 45160", "accession": "GCA_900091505.1", "taxid": 356851, "species_taxid": 356851, "relation_to_type": "type", "validated": true, "ani": 89.8395, "matched_fragments": 1832, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora orduensis", "strain": "strain=S2509", "accession": 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