{ "type": "genome", "identifier": "GCF_004217145.1", "organism": "Kribbella rubisoli", "title": "Kribbella rubisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004217145.1", "bioproject": "PRJNA224116", "biosample": "SAMN10866374", "wgs_master": "SHKR00000000.1", "refseq_category": "reference genome", "taxid": "3075929", "species_taxid": "3075929", "organism_name": "Kribbella rubisoli", "infraspecific_name": "strain=VKM Ac-2540", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/20", "asm_name": "ASM421714v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004217145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/217/145/GCF_004217145.1_ASM421714v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8637800", "genome_size_ungapped": "8637510", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004217145.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "8402", "protein_coding_gene_count": "8305", "non_coding_gene_count": "60", "pubmed_id": "26203337" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-20", "dateModified": "2019-02-20", "datePublished": "2019-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Kribbella rubisoli" ], "sample_taxid": [ "3075929" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.347 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8637800", "Number of Sequences": "19", "Longest Sequences (bp)": "2315199", "N50 (bp)": "1140580", "Gap Ratio (%)": "0.003357", "GCcontent (%)": "67.9", "Number of CDSs": "8458", "Average Protein Length": "315.9", "Coding Ratio (%)": "92.8", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 91.4966, "matched_fragments": 2408, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella soli", "strain": "strain=KCTC 29219", "accession": "GCA_004331345.1", "taxid": 1124743, "species_taxid": 1124743, "relation_to_type": "type", "validated": true, "ani": 86.9775, "matched_fragments": 2183, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 86.914, "matched_fragments": 2148, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sindirgiensis", "strain": "strain=DSM 27082", "accession": "GCA_004331435.1", "taxid": 1124744, "species_taxid": 1124744, "relation_to_type": "type", "validated": true, "ani": 86.7395, "matched_fragments": 2112, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella shirazensis", "strain": "strain=DSM 45490", "accession": "GCA_011761605.1", "taxid": 1105143, "species_taxid": 1105143, "relation_to_type": "type", "validated": true, "ani": 86.3699, "matched_fragments": 1996, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella aluminosa", "strain": "strain=DSM 18824", "accession": "GCA_017876295.1", "taxid": 416017, "species_taxid": 416017, "relation_to_type": "type", "validated": true, "ani": 86.1379, "matched_fragments": 1989, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jejuensis", "strain": "strain=DSM 17305", "accession": "GCA_006715085.1", "taxid": 236068, "species_taxid": 236068, "relation_to_type": "type", "validated": true, "ani": 85.9529, "matched_fragments": 1999, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella solani", "strain": "strain=DSM 17294", "accession": "GCA_014205295.1", "taxid": 236067, "species_taxid": 236067, "relation_to_type": "type", "validated": true, "ani": 85.0177, "matched_fragments": 1801, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella pittospori", "strain": "strain=NRRL B-24813", "accession": "GCA_004331465.1", "taxid": 722689, "species_taxid": 722689, "relation_to_type": "type", "validated": true, "ani": 84.6637, "matched_fragments": 1973, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 84.4843, "matched_fragments": 2009, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 84.0811, "matched_fragments": 1586, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sandramycini", "strain": "strain=ATCC 39419", "accession": "GCA_013131805.1", "taxid": 60450, "species_taxid": 60450, "relation_to_type": "type", "validated": true, "ani": 82.9238, "matched_fragments": 1589, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sandramycini", "strain": "strain=DSM 15626", "accession": "GCA_014207795.1", "taxid": 60450, "species_taxid": 60450, "relation_to_type": "type", "validated": true, "ani": 82.9219, "matched_fragments": 1598, "total_fragments": 2868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005233875.1", "gtdb_species": "s__Kribbella sp005233875", "ani": 91.4871, "matched_fragments": 2407, "total_fragments": 2868, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004365875.1", "gtdb_species": "s__Kribbella sp004365875", "ani": 88.068, "matched_fragments": 2238, "total_fragments": 2868, "gtdb_taxonomy": 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.22", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004331435.1", "gtdb_species": "s__Kribbella sindirgiensis", "ani": 86.7468, "matched_fragments": 2110, "total_fragments": 2868, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.59", "min_intra_species_ani": "95.53", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_011761605.1", "gtdb_species": "s__Kribbella shirazensis", "ani": 86.3661, "matched_fragments": 1997, "total_fragments": 2868, "gtdb_taxonomy": 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