{ "type": "genome", "identifier": "GCF_004217175.1", "organism": "Leucobacter luti", "title": "Leucobacter luti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004217175.1", "bioproject": "PRJNA224116", "biosample": "SAMN10864718", "wgs_master": "SHKI00000000.1", "refseq_category": "reference genome", "taxid": "340320", "species_taxid": "340320", "organism_name": "Leucobacter luti", "infraspecific_name": "strain=RF6", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/20", "asm_name": "ASM421717v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004217175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/217/175/GCF_004217175.1_ASM421717v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3618231", "genome_size_ungapped": "3617461", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004217175.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "3152", "protein_coding_gene_count": "3079", "non_coding_gene_count": "54", "pubmed_id": "26203337" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-20", "dateModified": "2019-02-20", "datePublished": "2019-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter luti" ], "sample_taxid": [ "340320" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.980 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3618231", "Number of Sequences": "10", "Longest Sequences (bp)": "772129", "N50 (bp)": "603919", "Gap Ratio (%)": "0.021281", "GCcontent (%)": "69.5", "Number of CDSs": "3149", "Average Protein Length": "348.0", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter luti", "strain": "strain=RF6", "accession": "GCA_004217175.1", "taxid": 340320, "species_taxid": 340320, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1200, "total_fragments": 1201, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leucobacter luti", "strain": "strain=RF6", "accession": "GCA_016758235.1", "taxid": 340320, "species_taxid": 340320, "relation_to_type": "suspected-type", "validated": true, "ani": 99.994, "matched_fragments": 1201, "total_fragments": 1201, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", "taxid": 491918, "species_taxid": 491918, "relation_to_type": "type", "validated": true, "ani": 81.8739, "matched_fragments": 580, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 81.4139, "matched_fragments": 596, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=JG 31", "accession": "GCA_000231305.1", "taxid": 1079994, "species_taxid": 1079994, "relation_to_type": "type", "validated": true, "ani": 81.1538, "matched_fragments": 562, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter ruminantium", "strain": "strain=A2", "accession": "GCA_017565705.1", "taxid": 1289170, "species_taxid": 1289170, "relation_to_type": "type", "validated": true, "ani": 81.0496, "matched_fragments": 507, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=DSM 22788", "accession": "GCA_900102345.1", "taxid": 1079994, "species_taxid": 1079994, "relation_to_type": "type", "validated": true, "ani": 80.9619, "matched_fragments": 578, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter zeae", "strain": "strain=CC-MF41", "accession": "GCA_016758175.1", "taxid": 1257004, "species_taxid": 1257004, "relation_to_type": "type", "validated": true, "ani": 80.9428, "matched_fragments": 578, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter massiliensis", "strain": "strain=122RC15", "accession": "GCA_002982315.1", "taxid": 1686285, "species_taxid": 1686285, "relation_to_type": "type", "validated": true, "ani": 80.803, "matched_fragments": 502, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter japonicus", "strain": "strain=CBX130", "accession": "GCA_001273855.1", "taxid": 1461259, "species_taxid": 1461259, "relation_to_type": "type", "validated": true, "ani": 80.3683, "matched_fragments": 515, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter soli", "strain": "strain=CIP 111803", "accession": "GCA_910593785.1", "taxid": 2812850, 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235, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium atlanticum", "strain": "strain=WY121", "accession": "GCA_015277815.1", "taxid": 2782168, "species_taxid": 2782168, "relation_to_type": "type", "validated": true, "ani": 77.4509, "matched_fragments": 271, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 76.1639, "matched_fragments": 222, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004217175.1", "gtdb_species": "s__Leucobacter luti", "ani": 100.0, "matched_fragments": 1200, "total_fragments": 1201, "gtdb_taxonomy": 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