{ "type": "genome", "identifier": "GCF_004217445.1", "organism": "Fluviicoccus keumensis", "title": "Fluviicoccus keumensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004217445.1", "bioproject": "PRJNA224116", "biosample": "SAMN10866387", "wgs_master": "SHKX00000000.1", "refseq_category": "reference genome", "taxid": "1435465", "species_taxid": "1435465", "organism_name": "Fluviicoccus keumensis", "infraspecific_name": "strain=DSM 105135", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/20", "asm_name": "ASM421744v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004217445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/217/445/GCF_004217445.1_ASM421744v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3682372", "genome_size_ungapped": "3682082", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004217445.1-RS_2024_04_10", "annotation_date": "2024-04-10", "total_gene_count": "3374", "protein_coding_gene_count": "3283", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-20", "dateModified": "2019-02-20", "datePublished": "2019-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Fluviicoccus keumensis" ], "sample_taxid": [ "1435465" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.027 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3682372", "Number of Sequences": "18", "Longest Sequences (bp)": "954650", "N50 (bp)": "589223", "Gap Ratio (%)": "0.007875", "GCcontent (%)": "61.0", "Number of CDSs": "3340", "Average Protein Length": "333.2", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fluviicoccus keumensis", "strain": "strain=DSM 105135", "accession": "GCA_004217445.1", "taxid": 1435465, "species_taxid": 1435465, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1218, 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"Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 77.6071, "matched_fragments": 210, "total_fragments": 1219, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 77.5516, "matched_fragments": 179, "total_fragments": 1219, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_000802425.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 77.5412, "matched_fragments": 195, "total_fragments": 1219, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas benzenivorans", "strain": "strain=DSM 8628", "accession": "GCA_900100495.1", "taxid": 556533, "species_taxid": 556533, "relation_to_type": "type", "validated": true, "ani": 77.5285, "matched_fragments": 213, "total_fragments": 1219, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_900114065.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 77.4818, "matched_fragments": 116, "total_fragments": 1219, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_900155995.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 77.4253, "matched_fragments": 200, "total_fragments": 1219, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=FDAARGOS_875", "accession": "GCA_016028655.1", 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"type", "validated": true, "ani": 77.2681, "matched_fragments": 134, "total_fragments": 1219, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax venustensis", "strain": "strain=ISO4", "accession": "GCA_015356855.1", "taxid": 172371, "species_taxid": 172371, "relation_to_type": "type", "validated": true, "ani": 77.1802, "matched_fragments": 153, "total_fragments": 1219, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundimaris", "strain": "strain=ST75FaO-1", "accession": "GCA_015265435.1", "taxid": 2735259, "species_taxid": 2735259, "relation_to_type": "type", "validated": true, "ani": 77.146, "matched_fragments": 156, "total_fragments": 1219, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 77.0541, 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