{ "type": "genome", "identifier": "GCF_004217455.1", "organism": "Blastococcus saxobsidens", "title": "Blastococcus saxobsidens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004217455.1", "bioproject": "PRJNA224116", "biosample": "SAMN05877738", "wgs_master": "SHKV00000000.1", "refseq_category": "reference genome", "taxid": "138336", "species_taxid": "138336", "organism_name": "Blastococcus saxobsidens", "infraspecific_name": "strain=DSM 44509", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/20", "asm_name": "ASM421745v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004217455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/217/455/GCF_004217455.1_ASM421745v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4533155", "genome_size_ungapped": "4533155", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004217455.1-RS_2024_04_10", "annotation_date": "2024-04-10", "total_gene_count": "4374", "protein_coding_gene_count": "4270", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-20", "dateModified": "2019-02-20", "datePublished": "2019-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Blastococcus saxobsidens" ], "sample_taxid": [ "138336" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.189 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4533155", "Number of Sequences": "1", "Longest Sequences (bp)": "4533155", "N50 (bp)": "4533155", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.5", "Number of CDSs": "4362", "Average Protein Length": "315.0", "Coding Ratio (%)": "90.9", "Number of rRNAs": "9", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blastococcus saxobsidens", "strain": "strain=DSM 44509", "accession": "GCA_004217455.1", "taxid": 138336, "species_taxid": 138336, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1510, "total_fragments": 1511, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Blastococcus saxobsidens", "strain": "strain=DSM 44509", "accession": "GCA_002938435.1", "taxid": 138336, "species_taxid": 138336, "relation_to_type": "type", "validated": true, "ani": 99.9671, "matched_fragments": 1453, "total_fragments": 1511, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Blastococcus atacamensis", "strain": "strain=P6", "accession": "GCA_002938425.1", "taxid": 2070508, "species_taxid": 2070508, "relation_to_type": "type", "validated": true, "ani": 85.898, "matched_fragments": 931, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus xanthinilyticus", "strain": "strain=DSM 46842", "accession": "GCA_008124835.1", "taxid": 1564164, "species_taxid": 1564164, "relation_to_type": "type", "validated": true, "ani": 85.205, "matched_fragments": 1037, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus aggregatus", "strain": "strain=DSM 4725", "accession": "GCA_900221005.1", "taxid": 38502, "species_taxid": 38502, "relation_to_type": "type", "validated": true, "ani": 83.9208, "matched_fragments": 919, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus litoris", "strain": "strain=GP-S2-8", "accession": "GCA_003075095.1", "taxid": 2171622, "species_taxid": 2171622, "relation_to_type": "type", "validated": true, "ani": 83.6972, "matched_fragments": 975, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus chilensis", "strain": "strain=B12", "accession": "GCA_002802985.1", "taxid": 2035835, "species_taxid": 2035835, "relation_to_type": "type", "validated": true, "ani": 83.1172, "matched_fragments": 894, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus 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"strain=DSM 45421", "accession": "GCA_900102745.1", "taxid": 1190417, "species_taxid": 1190417, "relation_to_type": "type", "validated": true, "ani": 82.8124, "matched_fragments": 935, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus normandii", "strain": "strain=DSM 45417", "accession": "GCA_003182485.1", "taxid": 1137989, "species_taxid": 1137989, "relation_to_type": "type", "validated": true, "ani": 82.7566, "matched_fragments": 930, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter roseus", "strain": "strain=DSM 45764", "accession": "GCA_007994135.1", "taxid": 1181884, "species_taxid": 1181884, "relation_to_type": "type", "validated": true, "ani": 81.9865, "matched_fragments": 869, "total_fragments": 1511, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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