{ "type": "genome", "identifier": "GCF_004217545.1", "organism": "Krasilnikovia cinnamomea", "title": "Krasilnikovia cinnamomea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004217545.1", "bioproject": "PRJNA224116", "biosample": "SAMN10865823", "wgs_master": "SHKY00000000.1", "refseq_category": "reference genome", "taxid": "349313", "species_taxid": "349313", "organism_name": "Krasilnikovia cinnamomea", "infraspecific_name": "strain=DSM 45162", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/20", "asm_name": "ASM421754v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004217545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/217/545/GCF_004217545.1_ASM421754v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7616132", "genome_size_ungapped": "7616132", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004217545.1-RS_2024_04_10", "annotation_date": "2024-04-10", "total_gene_count": "6725", "protein_coding_gene_count": "6543", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-20", "dateModified": "2019-02-20", "datePublished": "2019-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Krasilnikovia cinnamomea" ], "sample_taxid": [ "349313" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.027 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7616132", "Number of Sequences": "2", "Longest Sequences (bp)": "7425687", "N50 (bp)": "7425687", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.8", "Number of CDSs": "6796", "Average Protein Length": "335.9", "Coding Ratio (%)": "89.9", "Number of rRNAs": "9", "Number of tRNAs": "84", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes nipponensis", "strain": "strain=NBRC 14063", "accession": "GCA_016862275.1", "taxid": 135950, "species_taxid": 135950, "relation_to_type": "type", "validated": true, "ani": 81.776, "matched_fragments": 1395, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes digitatis", "strain": "strain=NBRC 12512", "accession": "GCA_016862155.1", "taxid": 1868, "species_taxid": 1868, "relation_to_type": "type", "validated": true, "ani": 81.7158, "matched_fragments": 1394, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes digitatis", "strain": "strain=DSM 43149", "accession": "GCA_014205335.1", "taxid": 1868, "species_taxid": 1868, "relation_to_type": "type", "validated": true, "ani": 81.701, "matched_fragments": 1427, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Couchioplanes caeruleus subsp. caeruleus", "strain": "strain=DSM 43634", "accession": "GCA_001884705.1", "taxid": 56427, "species_taxid": 56438, "relation_to_type": "type", "validated": true, "ani": 81.3402, "matched_fragments": 1229, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes auranticolor", "strain": "strain=NBRC 12245", "accession": "GCA_018332655.1", "taxid": 47988, "species_taxid": 47988, "relation_to_type": "type", "validated": true, "ani": 81.3286, "matched_fragments": 1327, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Couchioplanes caeruleus", "strain": "strain=DSM 43634", "accession": "GCA_003751945.1", "taxid": 56438, "species_taxid": 56438, "relation_to_type": "type", "validated": true, "ani": 81.2905, "matched_fragments": 1345, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=DSM 43866", "accession": "GCA_007829915.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 80.8676, "matched_fragments": 1260, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=ATCC 31121", "accession": "GCA_003711105.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 80.8362, "matched_fragments": 1254, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=NBRC 13999", "accession": "GCA_016862415.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 80.8321, "matched_fragments": 1219, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes friuliensis", "strain": "strain=DSM 7358", "accession": "GCA_000494755.1", "taxid": 196914, "species_taxid": 196914, "relation_to_type": "type", "validated": true, "ani": 80.6501, "matched_fragments": 1266, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes subtropicus", "strain": "strain=NRRL B-24665", "accession": "GCA_000721705.1", "taxid": 543632, "species_taxid": 543632, "relation_to_type": "type", "validated": true, "ani": 80.4408, "matched_fragments": 1317, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes octamycinicus", "strain": "strain=NBRC 14524", "accession": "GCA_016862295.1", "taxid": 135948, "species_taxid": 135948, "relation_to_type": "type", "validated": true, "ani": 80.4338, "matched_fragments": 1311, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes deccanensis", "strain": "strain=NBRC 13994", "accession": "GCA_016862115.1", "taxid": 113561, "species_taxid": 113561, "relation_to_type": "type", "validated": true, "ani": 80.4, "matched_fragments": 1269, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes octamycinicus", "strain": "strain=DSM 45809", "accession": "GCA_014205225.1", "taxid": 135948, "species_taxid": 135948, "relation_to_type": "type", "validated": true, "ani": 80.3838, "matched_fragments": 1371, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 80.2747, "matched_fragments": 1237, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lichenicola", "strain": "strain=LDG1-01", "accession": "GCA_016785085.1", "taxid": 2802976, "species_taxid": 2802976, "relation_to_type": "type", "validated": true, "ani": 80.2567, "matched_fragments": 1238, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes bogorensis", "strain": "strain=NBRC 110975", "accession": "GCA_018829635.1", "taxid": 1610840, "species_taxid": 1610840, "relation_to_type": "type", "validated": true, "ani": 80.19, "matched_fragments": 1211, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes utahensis", "strain": "strain=NBRC 13244", "accession": "GCA_016862455.1", "taxid": 1869, "species_taxid": 1869, "relation_to_type": "type", "validated": true, "ani": 80.0853, "matched_fragments": 1188, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maritima", "strain": "", "accession": "GCA_902825405.1", "taxid": 986711, "species_taxid": 986711, "relation_to_type": "type", "validated": true, "ani": 79.7742, "matched_fragments": 796, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chersina", "strain": "strain=DSM 44151", "accession": "GCA_900091475.1", "taxid": 47854, "species_taxid": 47854, "relation_to_type": "type", "validated": true, 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"status": "below_threshold" }, { "organism_name": "Saccharothrix obliqua", "strain": "strain=SC076", "accession": "GCA_019375475.1", "taxid": 2861747, "species_taxid": 2861747, "relation_to_type": "type", "validated": true, "ani": 76.345, "matched_fragments": 672, "total_fragments": 2538, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004217545.1", "gtdb_species": "s__Actinoplanes cinnamomeus", "ani": 100.0, "matched_fragments": 2536, "total_fragments": 2538, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016862275.1", "gtdb_species": 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