{ "type": "genome", "identifier": "GCF_004217615.1", "organism": "Micromonospora kangleipakensis", "title": "Micromonospora kangleipakensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004217615.1", "bioproject": "PRJNA224116", "biosample": "SAMN10865817", "wgs_master": "SHLD00000000.1", "refseq_category": "reference genome", "taxid": "1077942", "species_taxid": "1077942", "organism_name": "Micromonospora kangleipakensis", "infraspecific_name": "strain=DSM 45612", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/20", "asm_name": "ASM421761v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004217615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/217/615/GCF_004217615.1_ASM421761v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7267142", "genome_size_ungapped": "7267142", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004217615.1-RS_2024_04_10", "annotation_date": "2024-04-10", "total_gene_count": "6946", "protein_coding_gene_count": "6700", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-20", "dateModified": "2019-02-20", "datePublished": "2019-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora kangleipakensis" ], "sample_taxid": [ "1077942" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.926 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.85, "strain_heterogeneity": 33.33, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7267142", "Number of Sequences": "1", "Longest Sequences (bp)": "7267142", "N50 (bp)": "7267142", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.3", "Number of CDSs": "7018", "Average Protein Length": "303.1", "Coding Ratio (%)": "87.8", "Number of rRNAs": "9", "Number of tRNAs": "67", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora kangleipakensis", "strain": "strain=DSM 45612", "accession": "GCA_004217615.1", "taxid": 1077942, "species_taxid": 1077942, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2418, "total_fragments": 2422, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Micromonospora inositola", "strain": "strain=DSM 43819", "accession": "GCA_900090285.1", "taxid": 47865, "species_taxid": 47865, "relation_to_type": "type", "validated": true, "ani": 93.1921, "matched_fragments": 1811, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora veneta", "strain": "strain=CAP181", "accession": "GCA_016598485.1", "taxid": 2796464, "species_taxid": 2796464, "relation_to_type": "type", "validated": true, "ani": 91.2416, "matched_fragments": 1754, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora globispora", "strain": "strain=S2901", "accession": "GCA_003857015.1", "taxid": 1450148, "species_taxid": 1450148, "relation_to_type": "type", "validated": true, "ani": 89.0886, "matched_fragments": 1362, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora fulviviridis", "strain": "strain=JCM 3259", "accession": "GCA_014648395.1", "taxid": 47860, "species_taxid": 47860, "relation_to_type": "type", "validated": true, "ani": 88.3043, "matched_fragments": 1703, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora palomenae", "strain": "strain=DSM 102131", "accession": "GCA_007829925.1", "taxid": 1461247, "species_taxid": 1461247, "relation_to_type": "type", "validated": true, "ani": 87.7994, "matched_fragments": 1614, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora purpureochromogenes", "strain": "strain=DSM 43821", "accession": "GCA_900091515.1", "taxid": 47872, "species_taxid": 47872, "relation_to_type": "type", "validated": true, "ani": 87.7165, "matched_fragments": 1631, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" }, { 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