{ "type": "genome", "identifier": "GCF_004283755.1", "organism": "Pseudoxanthomonas winnipegensis", "title": "Pseudoxanthomonas winnipegensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Microbiology Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004283755.1", "bioproject": "PRJNA224116", "biosample": "SAMN10260859", "wgs_master": "SHMH00000000.1", "refseq_category": "na", "taxid": "2480810", "species_taxid": "2480810", "organism_name": "Pseudoxanthomonas winnipegensis", "infraspecific_name": "strain=NML 130738", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/20", "asm_name": "ASM428375v1", "asm_submitter": "National Microbiology Laboratory", "gbrs_paired_asm": "GCA_004283755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/283/755/GCF_004283755.1_ASM428375v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4492142", "genome_size_ungapped": "4492142", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004283755.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "4044", "protein_coding_gene_count": "3919", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-20", "dateModified": "2019-02-20", "datePublished": "2019-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoxanthomonas winnipegensis" ], "sample_taxid": [ "2480810" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: British Columbia" ], "sample_host_location_id": [], "data_size": "1.207 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4492142", "Number of Sequences": "19", "Longest Sequences (bp)": "737149", "N50 (bp)": "431350", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.2", "Number of CDSs": "4029", "Average Protein Length": "328.5", "Coding Ratio (%)": "88.4", "Number of rRNAs": "4", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoxanthomonas winnipegensis", "strain": "strain=NML 130738", "accession": "GCA_004283755.1", "taxid": 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1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas beigongshangi", "strain": "strain=REN9", "accession": "GCA_016820515.1", "taxid": 2782537, "species_taxid": 2782537, "relation_to_type": "type", "validated": true, "ani": 81.6333, "matched_fragments": 731, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas bentonitica", "strain": "strain=DSM 103927", "accession": "GCA_013185915.1", "taxid": 1450134, "species_taxid": 1450134, "relation_to_type": "type", "validated": true, "ani": 81.522, "matched_fragments": 710, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pavanii", "strain": "strain=DSM 25135", "accession": "GCA_001431565.1", "taxid": 487698, "species_taxid": 487698, "relation_to_type": "type", "validated": true, "ani": 81.2934, "matched_fragments": 710, "total_fragments": 1489, "ani_threshold": 95, "status": 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