{ "type": "genome", "identifier": "GCF_004295345.1", "organism": "Shewanella maritima", "title": "Shewanella maritima", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Marine Biodiversity Institute of Korea", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004295345.1", "bioproject": "PRJNA224116", "biosample": "SAMN10928316", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2520507", "species_taxid": "2520507", "organism_name": "Shewanella maritima", "infraspecific_name": "strain=D4-2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/25", "asm_name": "ASM429534v1", "asm_submitter": "National Marine Biodiversity Institute of Korea", "gbrs_paired_asm": "GCA_004295345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/295/345/GCF_004295345.1_ASM429534v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4718011", "genome_size_ungapped": "4718011", "gc_percent": "44.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004295345.1-RS_2024_04_10", "annotation_date": "2024-04-10", "total_gene_count": "4056", "protein_coding_gene_count": "3832", "non_coding_gene_count": "131", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-25", "dateModified": "2019-02-25", "datePublished": "2019-02-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella maritima" ], "sample_taxid": [ "2520507" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Dokdo Island" ], "sample_host_location_id": [], "data_size": "1.327 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 16.0, "max": 16.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4718011", "Number of Sequences": "1", "Longest Sequences (bp)": "4718011", "N50 (bp)": "4718011", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.5", "Number of CDSs": "4020", "Average Protein Length": "330.8", "Coding Ratio (%)": "84.6", "Number of rRNAs": "25", "Number of tRNAs": "103", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella maritima", "strain": "strain=D4-2", "accession": "GCA_004295345.1", "taxid": 2520507, "species_taxid": 2520507, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1568, "total_fragments": 1572, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shewanella intestini", "strain": "strain=MCCC 1A01895", "accession": "GCA_018221465.1", "taxid": 2017544, "species_taxid": 2017544, "relation_to_type": "type", "validated": true, "ani": 78.9751, "matched_fragments": 442, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella japonica", "strain": "strain=KCTC 22435", "accession": "GCA_002075795.1", "taxid": 93973, "species_taxid": 93973, "relation_to_type": "type", "validated": true, "ani": 78.9539, "matched_fragments": 353, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella pealeana", "strain": "strain=ATCC 700345", "accession": "GCA_000018285.1", "taxid": 70864, "species_taxid": 70864, "relation_to_type": "type", "validated": true, "ani": 78.9503, "matched_fragments": 275, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella vesiculosa", "strain": "strain=M7", "accession": "GCA_021560015.1", "taxid": 518738, "species_taxid": 518738, "relation_to_type": "type", "validated": true, "ani": 78.7248, "matched_fragments": 309, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella psychromarinicola", "strain": "strain=M2", "accession": "GCA_003855155.1", "taxid": 2487742, "species_taxid": 2487742, "relation_to_type": "type", "validated": true, "ani": 78.701, "matched_fragments": 291, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella olleyana", "strain": "strain=LMG 21437", "accession": "GCA_023283825.1", "taxid": 135626, "species_taxid": 135626, "relation_to_type": "type", "validated": true, "ani": 78.6168, "matched_fragments": 344, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella electrodiphila", "strain": "strain=DSM 24955", "accession": "GCA_023283985.1", "taxid": 934143, "species_taxid": 934143, "relation_to_type": "type", "validated": true, "ani": 78.4854, "matched_fragments": 342, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella litoralis", "strain": "strain=JCM 32306", "accession": "GCA_009828585.1", "taxid": 2282700, "species_taxid": 2282700, "relation_to_type": "type", "validated": true, "ani": 78.3478, "matched_fragments": 341, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sairae", "strain": "strain=LMG 21408", "accession": "GCA_023283535.1", "taxid": 190310, "species_taxid": 190310, "relation_to_type": "type", "validated": true, "ani": 78.2919, "matched_fragments": 250, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella saliphila", "strain": "strain=JCM 32304", "accession": "GCA_014648295.1", "taxid": 2282698, "species_taxid": 2282698, "relation_to_type": "type", "validated": true, "ani": 78.2891, "matched_fragments": 350, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella oncorhynchi", "strain": "strain=S-1", "accession": "GCA_012584455.1", "taxid": 2726434, "species_taxid": 2726434, "relation_to_type": "type", "validated": true, "ani": 78.272, "matched_fragments": 221, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella saliphila", "strain": "strain=KCTC 62131", "accession": "GCA_023283695.1", "taxid": 2282698, "species_taxid": 2282698, "relation_to_type": "type", "validated": true, "ani": 78.2579, "matched_fragments": 351, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=KCTC 42807", "accession": "GCA_023283595.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 78.2054, "matched_fragments": 321, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella basaltis", "strain": "strain=KCTC 22121", "accession": "GCA_023283885.1", "taxid": 472183, "species_taxid": 472183, "relation_to_type": "type", "validated": true, "ani": 78.1993, "matched_fragments": 312, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=CGMCC 1.15339", "accession": "GCA_014641855.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 78.199, "matched_fragments": 330, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella ulleungensis", "strain": "strain=KCTC 62130", "accession": "GCA_023283965.1", "taxid": 2282699, "species_taxid": 2282699, "relation_to_type": "type", "validated": true, "ani": 78.1942, "matched_fragments": 332, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella aestuarii", "strain": "strain=JCM 17801", "accession": "GCA_023283685.1", "taxid": 1028752, "species_taxid": 1028752, "relation_to_type": "type", "validated": true, "ani": 78.1374, "matched_fragments": 318, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella schlegeliana", "strain": "strain=LMG 21406", "accession": "GCA_023283605.1", "taxid": 190308, "species_taxid": 190308, "relation_to_type": "type", "validated": true, "ani": 78.1363, "matched_fragments": 236, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella ulleungensis", "strain": "strain=JCM 32305", "accession": "GCA_014648315.1", "taxid": 2282699, "species_taxid": 2282699, "relation_to_type": "type", "validated": true, "ani": 78.0867, "matched_fragments": 340, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004295345.1", "gtdb_species": "s__Shewanella maritima", "ani": 100.0, "matched_fragments": 1568, "total_fragments": 1572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002966515.1", "gtdb_species": "s__Shewanella sp002966515", "ani": 79.2805, "matched_fragments": 231, "total_fragments": 1572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.53", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018221465.1", "gtdb_species": "s__Shewanella intestini", "ani": 78.976, "matched_fragments": 442, "total_fragments": 1572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011765625.1", "gtdb_species": "s__Shewanella aestuarii_A", "ani": 78.9086, "matched_fragments": 337, "total_fragments": 1572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003855395.1", "gtdb_species": "s__Shewanella livingstonensis", "ani": 78.7542, "matched_fragments": 298, "total_fragments": 1572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003797885.1", "gtdb_species": "s__Shewanella vesiculosa", "ani": 78.662, "matched_fragments": 306, "total_fragments": 1572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.48", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Shewanella", "maritima" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }