{ "type": "genome", "identifier": "GCF_004307995.1", "organism": "Paenibacillus thalictri", "title": "Paenibacillus thalictri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Center for Medicine & Biology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004307995.1", "bioproject": "PRJNA224116", "biosample": "SAMN10962218", "wgs_master": "SIRE00000000.1", "refseq_category": "reference genome", "taxid": "2527873", "species_taxid": "2527873", "organism_name": "Paenibacillus thalictri", "infraspecific_name": "strain=N2SHLJ1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/27", "asm_name": "ASM430799v1", "asm_submitter": "Research Center for Medicine & Biology", "gbrs_paired_asm": "GCA_004307995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/307/995/GCF_004307995.1_ASM430799v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9419252", "genome_size_ungapped": "9419252", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004307995.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "8086", "protein_coding_gene_count": "7895", "non_coding_gene_count": "113", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-27", "dateModified": "2019-02-27", "datePublished": "2019-02-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus thalictri" ], "sample_taxid": [ "2527873" ], "sample_host_organism": [ "Thalictrum simplex L" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou" ], "sample_host_location_id": [], "data_size": "2.676 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9419252", "Number of Sequences": "82", "Longest Sequences (bp)": "551458", "N50 (bp)": "253548", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.8", "Number of CDSs": "8074", "Average Protein Length": "342.3", "Coding Ratio (%)": "88.0", "Number of rRNAs": "7", "Number of tRNAs": "89", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus thalictri", "strain": "strain=N2SHLJ1", "accession": "GCA_004307995.1", "taxid": 2527873, "species_taxid": 2527873, "relation_to_type": "type", "validated": true, "ani": 100.0, 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1401, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4932, "matched_fragments": 118, "total_fragments": 3098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus cymbidii", "strain": "strain=R196", "accession": "GCA_004764705.1", "taxid": 1639034, "species_taxid": 1639034, "relation_to_type": "type", "validated": true, "ani": 76.453, "matched_fragments": 274, "total_fragments": 3098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus caui", "strain": "strain=81-11", "accession": "GCA_019904135.1", "taxid": 2873927, "species_taxid": 2873927, "relation_to_type": "type", "validated": true, "ani": 76.4214, "matched_fragments": 103, "total_fragments": 3098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, 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