{ "tc_result": [ { "organism_name": "Agrobacterium cavarae", "strain": "strain=RZME10", "accession": "GCA_004310285.1", "taxid": 2528239, "species_taxid": 2528239, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1658, "total_fragments": 1661, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Agrobacterium larrymoorei", "strain": "strain=CFBP5473", "accession": "GCA_005145045.1", "taxid": 160699, "species_taxid": 160699, "relation_to_type": "type", "validated": true, "ani": 82.3767, "matched_fragments": 978, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium larrymoorei", "strain": "strain=ATCC 51759", "accession": "GCA_000518585.1", "taxid": 160699, "species_taxid": 160699, "relation_to_type": "type", "validated": true, "ani": 82.3219, "matched_fragments": 985, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium tumefaciens", "strain": "strain=B6", "accession": "GCA_001541315.1", "taxid": 358, "species_taxid": 358, "relation_to_type": "suspected-type", "validated": true, "ani": 80.7559, "matched_fragments": 793, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium tumefaciens", "strain": "strain=ICMP 5856T", "accession": "GCA_009498475.1", "taxid": 358, "species_taxid": 358, "relation_to_type": "suspected-type", "validated": true, "ani": 80.7264, "matched_fragments": 799, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium leguminum", "strain": "strain=MOPV5", "accession": "GCA_015704895.1", "taxid": 2792015, "species_taxid": 2792015, "relation_to_type": "type", "validated": true, "ani": 80.7009, "matched_fragments": 813, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium rubi", "strain": "strain=DSM 6772", "accession": "GCA_017873055.1", "taxid": 28099, "species_taxid": 28099, "relation_to_type": "type", "validated": true, "ani": 80.6832, "matched_fragments": 800, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium tumefaciens", "strain": "strain=B6", "accession": "GCA_900045375.1", "taxid": 358, "species_taxid": 358, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6807, "matched_fragments": 807, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium oryzihabitans", "strain": "strain=M15", "accession": "GCA_010669145.1", "taxid": 2267833, "species_taxid": 2267833, "relation_to_type": "type", "validated": true, "ani": 80.4676, "matched_fragments": 827, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium salinitolerans", "strain": "strain=YIC 5082", "accession": "GCA_002008225.1", "taxid": 1183413, "species_taxid": 1183413, "relation_to_type": "type", "validated": true, "ani": 80.3438, "matched_fragments": 806, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium skierniewicense", "strain": "strain=Ch11", "accession": "GCA_023757665.1", "taxid": 984260, "species_taxid": 984260, "relation_to_type": "type", "validated": true, "ani": 80.0493, "matched_fragments": 719, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium skierniewicense", "strain": "strain=DSM 26438", "accession": "GCA_014196515.1", "taxid": 984260, "species_taxid": 984260, "relation_to_type": "type", "validated": true, "ani": 79.9874, "matched_fragments": 722, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium redzepovicii", "strain": "strain=18T", "accession": "GCA_019793435.1", "taxid": 2867518, "species_taxid": 2867518, "relation_to_type": "type", "validated": true, "ani": 78.5116, "matched_fragments": 551, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004310285.1", "gtdb_species": "s__Agrobacterium cavarae", "ani": 100.0, "matched_fragments": 1658, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.31", "min_intra_species_ani": "96.14", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 31, "status": "conclusive" }, { "accession": "GCF_005145045.1", "gtdb_species": "s__Agrobacterium larrymoorei", "ani": 82.3804, "matched_fragments": 977, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013322225.1", "gtdb_species": "s__Agrobacterium larrymoorei_A", "ani": 81.1746, "matched_fragments": 798, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001541315.1", "gtdb_species": "s__Agrobacterium tumefaciens", "ani": 80.7381, "matched_fragments": 796, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005221385.1", "gtdb_species": "s__Agrobacterium sp900013535", "ani": 80.387, "matched_fragments": 821, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_007002745.1", "gtdb_species": "s__Agrobacterium rhizogenes_B", "ani": 80.3666, "matched_fragments": 801, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013337285.1", "gtdb_species": "s__Agrobacterium tumefaciens_H", "ani": 80.2879, "matched_fragments": 808, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_009649785.1", "gtdb_species": "s__Agrobacterium fabacearum", "ani": 80.2418, "matched_fragments": 760, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "96.96", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.76", "num_clustered_genomes": 243, "status": "-" }, { "accession": "GCF_000949865.1", "gtdb_species": "s__Agrobacterium nepotum", "ani": 80.2363, "matched_fragments": 787, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003241215.1", "gtdb_species": "s__Agrobacterium fabrum_A", "ani": 79.9023, "matched_fragments": 594, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013390595.1", "gtdb_species": "s__Agrobacterium sp005938205", "ani": 79.8175, "matched_fragments": 667, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }