{ "type": "genome", "identifier": "GCF_004310325.1", "organism": "Hyunsoonleella flava", "title": "Hyunsoonleella flava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004310325.1", "bioproject": "PRJNA224116", "biosample": "SAMN10948624", "wgs_master": "SIRT00000000.1", "refseq_category": "reference genome", "taxid": "2527939", "species_taxid": "2527939", "organism_name": "Hyunsoonleella flava", "infraspecific_name": "strain=T58", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/27", "asm_name": "ASM431032v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_004310325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/310/325/GCF_004310325.1_ASM431032v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3807999", "genome_size_ungapped": "3807999", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004310325.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3367", "protein_coding_gene_count": "3301", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-27", "dateModified": "2019-02-27", "datePublished": "2019-02-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Hyunsoonleella flava" ], "sample_taxid": [ "2527939" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Weihai" ], "sample_host_location_id": [], "data_size": "1.070 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3807999", "Number of Sequences": "63", "Longest Sequences (bp)": "752412", "N50 (bp)": "214833", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.0", "Number of CDSs": "3258", "Average Protein Length": "348.8", "Coding Ratio (%)": "89.5", "Number of rRNAs": "2", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1245, "total_fragments": 1250, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=CGMCC 1.11009", "accession": "GCA_014636335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": "type", "validated": true, "ani": 80.6476, "matched_fragments": 766, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=SW033", "accession": "GCA_004310335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": "type", "validated": true, "ani": 80.6214, "matched_fragments": 763, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 80.1605, "matched_fragments": 687, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Hyunsoonleella", "flava" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }