{ "type": "genome", "identifier": "GCF_004310865.1", "organism": "Aquabacterium lacunae", "title": "Aquabacterium lacunae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Kaohsiung University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004310865.1", "bioproject": "PRJNA224116", "biosample": "SAMN10979390", "wgs_master": "SIXI00000000.1", "refseq_category": "reference genome", "taxid": "2528630", "species_taxid": "2528630", "organism_name": "Aquabacterium lacunae", "infraspecific_name": "strain=KMB7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/27", "asm_name": "ASM431086v1", "asm_submitter": "National Kaohsiung University of Science and Technology", "gbrs_paired_asm": "GCA_004310865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/310/865/GCF_004310865.1_ASM431086v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3896784", "genome_size_ungapped": "3896784", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004310865.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "3413", "protein_coding_gene_count": "3333", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-27", "dateModified": "2019-02-27", "datePublished": "2019-02-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Aquabacterium lacunae" ], "sample_taxid": [ "2528630" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.063 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3896784", "Number of Sequences": "64", "Longest Sequences (bp)": "863912", "N50 (bp)": "554491", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.4", "Number of CDSs": "3343", "Average Protein Length": "352.4", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquabacterium lacunae", "strain": "strain=KMB7", "accession": "GCA_004310865.1", "taxid": 2528630, "species_taxid": 2528630, 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678, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium olei", "strain": "strain=NBRC 110486", "accession": "GCA_003100395.1", "taxid": 1296669, "species_taxid": 1296669, "relation_to_type": "type", "validated": true, "ani": 82.1438, "matched_fragments": 669, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium fontiphilum", "strain": "strain=CS-6", "accession": "GCA_009909205.1", "taxid": 450365, "species_taxid": 450365, "relation_to_type": "type", "validated": true, "ani": 81.697, "matched_fragments": 627, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 79.8125, "matched_fragments": 519, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 79.7754, "matched_fragments": 482, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella benzenivorans", "strain": "strain=B7", "accession": "GCA_020387415.1", "taxid": 2831643, "species_taxid": 2831643, "relation_to_type": "type", "validated": true, "ani": 79.7468, "matched_fragments": 478, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus sulfidivorans", "strain": "strain=D-501", "accession": "GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 79.5443, "matched_fragments": 475, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella brevitalea", "strain": "strain=DSM 7029", "accession": "GCA_001017435.1", "taxid": 413882, "species_taxid": 413882, "relation_to_type": "type", "validated": true, "ani": 79.0993, "matched_fragments": 470, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004310865.1", "gtdb_species": "s__Aquabacterium lacunae", "ani": 100.0, "matched_fragments": 1275, "total_fragments": 1275, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_001770725.1", "gtdb_species": "s__Aquabacterium sp001770725", "ani": 82.777, 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