{ "type": "genome", "identifier": "GCF_004323735.1", "organism": "Streptomonospora litoralis", "title": "Streptomonospora litoralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "helmholtz center for infection", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004323735.1", "bioproject": "PRJNA224116", "biosample": "SAMN10601635", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2498135", "species_taxid": "2498135", "organism_name": "Streptomonospora litoralis", "infraspecific_name": "strain=M2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/04", "asm_name": "ASM432373v1", "asm_submitter": "helmholtz center for infection", "gbrs_paired_asm": "GCA_004323735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/323/735/GCF_004323735.1_ASM432373v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5814190", "genome_size_ungapped": "5814190", "gc_percent": "72.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004323735.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5076", "protein_coding_gene_count": "4957", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-04", "dateModified": "2019-03-04", "datePublished": "2019-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomonospora litoralis" ], "sample_taxid": [ "2498135" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: beach, Cuxhaven" ], "sample_host_location_id": [], "data_size": "1.557 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 38.0, "max": 38.0 }, "completeness": 100.0, "contamination": 2.31, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5814190", "Number of Sequences": "2", "Longest Sequences (bp)": "5724192", "N50 (bp)": "5724192", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "5166", "Average Protein Length": "315.1", "Coding Ratio (%)": "84.0", "Number of rRNAs": "15", "Number of tRNAs": "70", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1937, "total_fragments": 1937, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomonospora alba", "strain": "strain=YIM 90003", "accession": "GCA_000826685.1", "taxid": 183763, "species_taxid": 183763, "relation_to_type": "type", "validated": true, "ani": 85.324, "matched_fragments": 1385, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora salina", "strain": "strain=DSM 44593", "accession": "GCA_014204715.1", "taxid": 104205, "species_taxid": 104205, "relation_to_type": "type", "validated": true, "ani": 84.7037, "matched_fragments": 1326, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis mwathae", "strain": "strain=DSM 46659", "accession": "GCA_014201195.1", "taxid": 1472723, "species_taxid": 1472723, "relation_to_type": "type", "validated": true, "ani": 80.8922, "matched_fragments": 911, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis gilva", "strain": "strain=YIM 90087", "accession": "GCA_002263495.1", "taxid": 280236, "species_taxid": 280236, "relation_to_type": "type", "validated": true, "ani": 80.6962, "matched_fragments": 899, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis gilva", "strain": "strain=YIM 90087", "accession": "GCA_000341165.1", "taxid": 280236, "species_taxid": 280236, "relation_to_type": "type", "validated": true, "ani": 80.6875, "matched_fragments": 825, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis chromatogenes", "strain": "strain=YIM 90109", "accession": "GCA_000341185.1", "taxid": 280239, "species_taxid": 280239, "relation_to_type": "type", "validated": true, "ani": 80.5191, "matched_fragments": 949, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis composta", "strain": "strain=DSM 44551", "accession": "GCA_014200805.1", "taxid": 157465, "species_taxid": 157465, "relation_to_type": "type", "validated": true, "ani": 80.29, "matched_fragments": 1041, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida cellulosilytica", "strain": "strain=TB100", "accession": "GCA_001517975.1", "taxid": 144786, "species_taxid": 144786, "relation_to_type": "type", "validated": true, "ani": 79.9603, "matched_fragments": 717, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 79.9357, "matched_fragments": 771, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 79.8438, "matched_fragments": 757, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 79.8374, "matched_fragments": 834, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 79.2965, "matched_fragments": 782, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis lucentensis", "strain": "strain=DSM 44048", "accession": "GCA_000341125.1", 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