{ "type": "genome", "identifier": "GCF_004328625.1", "organism": "Streptomyces seoulensis", "title": "Streptomyces seoulensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004328625.1", "bioproject": "PRJNA224116", "biosample": "SAMN09867566", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "73044", "species_taxid": "73044", "organism_name": "Streptomyces seoulensis", "infraspecific_name": "strain=KCTC 9819", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/06", "asm_name": "ASM432862v1", "asm_submitter": "Seoul National University", "gbrs_paired_asm": "GCA_004328625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/328/625/GCF_004328625.1_ASM432862v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6426245", "genome_size_ungapped": "6426245", "gc_percent": "72.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004328625.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5877", "protein_coding_gene_count": "5708", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-06", "dateModified": "2019-03-06", "datePublished": "2019-03-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces seoulensis" ], "sample_taxid": [ "73044" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Kwanak Mountain, Seoul" ], "sample_host_location_id": [], "data_size": "1.715 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6426245", "Number of Sequences": "2", "Longest Sequences (bp)": "6339363", "N50 (bp)": "6339363", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.9", "Number of CDSs": "5897", "Average Protein Length": "325.4", "Coding Ratio (%)": "89.6", "Number of rRNAs": "18", "Number of tRNAs": "81", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces bauhiniae", "strain": "strain=Bv016", "accession": "GCA_004784475.1", "taxid": 2340725, "species_taxid": 2340725, "relation_to_type": "type", "validated": true, "ani": 95.5009, "matched_fragments": 1859, "total_fragments": 2141, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces griseoluteus", "strain": "strain=JCM 4765", "accession": "GCA_014656035.1", "taxid": 29306, "species_taxid": 29306, "relation_to_type": "type", "validated": true, "ani": 94.7131, "matched_fragments": 1809, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseoluteus", "strain": "strain=JCM 4765", "accession": "GCA_004784465.1", "taxid": 29306, "species_taxid": 29306, "relation_to_type": "type", "validated": true, "ani": 94.6561, "matched_fragments": 1826, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces recifensis", "strain": "strain=NRRL B-3811", "accession": "GCA_002154615.1", "taxid": 67355, "species_taxid": 67355, "relation_to_type": "type", "validated": true, "ani": 94.4351, "matched_fragments": 1350, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseochromogenes", "strain": "strain=DSM 40499", "accession": "GCA_017874495.1", "taxid": 68214, "species_taxid": 68214, "relation_to_type": "type", "validated": true, "ani": 85.6563, "matched_fragments": 1530, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 85.603, "matched_fragments": 1561, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barringtoniae", "strain": "strain=JA03", "accession": "GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 85.3894, "matched_fragments": 1522, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monashensis", "strain": "strain=MUSC 1", "accession": "GCA_001866665.1", "taxid": 1678012, "species_taxid": 1678012, "relation_to_type": "type", "validated": true, "ani": 85.2796, "matched_fragments": 1523, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", "taxid": 2873384, "species_taxid": 2873384, "relation_to_type": "type", "validated": true, "ani": 84.8734, "matched_fragments": 1422, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces solaniscabiei", "strain": "strain=FS70", "accession": "GCA_020312315.1", "taxid": 2683255, "species_taxid": 2683255, "relation_to_type": "type", "validated": true, "ani": 84.4937, "matched_fragments": 1419, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces triticisoli", "strain": "strain=NEAU-DSCPA1-4-4", "accession": "GCA_003270085.1", "taxid": 2182797, "species_taxid": 2182797, "relation_to_type": "type", "validated": true, "ani": 84.392, "matched_fragments": 1229, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parvulus", "strain": "strain=JCM 4068", "accession": "GCA_014648855.1", "taxid": 146923, "species_taxid": 146923, "relation_to_type": "type", "validated": true, "ani": 84.3707, "matched_fragments": 1445, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 84.211, "matched_fragments": 1251, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 83.9667, "matched_fragments": 1493, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces capitiformicae", "strain": "strain=1H-SSA4", "accession": "GCA_002214185.1", "taxid": 2014920, "species_taxid": 2014920, "relation_to_type": "type", "validated": true, "ani": 82.6725, "matched_fragments": 1394, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sporangiiformans", "strain": "strain=NEAU-SSA 1", "accession": "GCA_005768555.2", "taxid": 2315329, "species_taxid": 2315329, "relation_to_type": "type", "validated": true, "ani": 82.4897, "matched_fragments": 1277, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces laurentii", "strain": "strain=ATCC 31255", "accession": "GCA_002355495.1", "taxid": 39478, "species_taxid": 39478, "relation_to_type": "type", "validated": true, "ani": 81.9335, "matched_fragments": 1216, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces roseifaciens", "strain": "strain=MBT76", "accession": "GCA_001445655.1", "taxid": 1488406, "species_taxid": 1488406, "relation_to_type": "type", "validated": true, "ani": 81.2925, "matched_fragments": 1157, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora herbaricolor", "strain": "strain=JCM 4138", "accession": "GCA_014648975.1", "taxid": 68217, "species_taxid": 68217, "relation_to_type": "type", "validated": true, "ani": 79.1185, "matched_fragments": 1040, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004784475.1", "gtdb_species": "s__Streptomyces bauhiniae", "ani": 95.4896, "matched_fragments": 1860, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.3953, "mean_intra_species_ani": "95.70", "min_intra_species_ani": "95.47", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_004784465.1", "gtdb_species": "s__Streptomyces griseoluteus", "ani": 94.6561, "matched_fragments": 1826, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.3953, "mean_intra_species_ani": "97.39", "min_intra_species_ani": "95.67", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_019090105.1", "gtdb_species": "s__Streptomyces sp019090105", "ani": 92.7724, "matched_fragments": 1786, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000373625.1", "gtdb_species": "s__Streptomyces sp000373625", "ani": 88.0378, "matched_fragments": 1648, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009863025.1", "gtdb_species": "s__Streptomyces sp009863025", "ani": 87.8938, "matched_fragments": 1400, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016482685.1", "gtdb_species": "s__Streptomyces sp016482685", "ani": 87.8035, "matched_fragments": 1656, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002813405.1", "gtdb_species": "s__Streptomyces sp002813405", "ani": 86.3134, "matched_fragments": 1561, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007176755.1", "gtdb_species": "s__Streptomyces sp007176755", "ani": 86.0207, "matched_fragments": 1541, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013046785.1", "gtdb_species": "s__Streptomyces sp013046785", "ani": 85.8356, "matched_fragments": 1550, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002920615.1", "gtdb_species": "s__Streptomyces sp002920615", "ani": 85.6725, "matched_fragments": 1564, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.01", "min_intra_species_ani": "97.01", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014203595.1", "gtdb_species": "s__Streptomyces echinatus", "ani": 85.5811, "matched_fragments": 1567, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001905385.1", "gtdb_species": "s__Streptomyces sp001905385", "ani": 84.2626, "matched_fragments": 1422, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.01", "min_intra_species_ani": "96.01", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_019049245.1", "gtdb_species": "s__Streptomyces sp019049245", "ani": 83.6652, "matched_fragments": 1423, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014495685.1", "gtdb_species": "s__Streptomyces sp014495685", "ani": 83.629, "matched_fragments": 1348, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014654785.1", "gtdb_species": "s__Streptomyces mashuensis", "ani": 81.2982, "matched_fragments": 1084, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 29.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 6383410.0, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "seoulensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }