{ "type": "genome", "identifier": "GCF_004330295.1", "organism": "Rahnella victoriana", "title": "Rahnella victoriana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institut Pasteur", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004330295.1", "bioproject": "PRJNA224116", "biosample": "SAMN10987324", "wgs_master": "SJOJ00000000.1", "refseq_category": "na", "taxid": "1510570", "species_taxid": "1510570", "organism_name": "Rahnella victoriana", "infraspecific_name": "strain=DSM 27397", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/06", "asm_name": "ASM433029v1", "asm_submitter": "Institut Pasteur", "gbrs_paired_asm": "GCA_004330295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/330/295/GCF_004330295.1_ASM433029v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5309719", "genome_size_ungapped": "5309204", "gc_percent": "53.500000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004330295.1-RS_2024_04_11", "annotation_date": "2024-04-11", "total_gene_count": "4876", "protein_coding_gene_count": "4750", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-06", "dateModified": "2019-03-06", "datePublished": "2019-03-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Rahnella victoriana" ], "sample_taxid": [ "1510570" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.506 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5309719", "Number of Sequences": "85", "Longest Sequences (bp)": "375080", "N50 (bp)": "178075", "Gap Ratio (%)": "0.009699", "GCcontent (%)": "53.7", "Number of CDSs": "4739", "Average Protein Length": "325.7", "Coding Ratio (%)": "87.2", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rahnella victoriana", "strain": "strain=DSM 27397", "accession": "GCA_004330295.1", "taxid": 1510570, "species_taxid": 1510570, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1729, "total_fragments": 1733, "ani_threshold": 95, "status": "conclusive" }, { 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1733, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_000241955.1", "gtdb_species": "s__Rahnella aquatilis", "ani": 89.7096, "matched_fragments": 1404, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.30", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_011684115.1", "gtdb_species": "s__Rahnella aceris", "ani": 89.3513, "matched_fragments": 1439, "total_fragments": 1733, "gtdb_taxonomy": 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