{ "type": "genome", "identifier": "GCF_004331345.1", "organism": "Kribbella soli", "title": "Kribbella soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Cape Town", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004331345.1", "bioproject": "PRJNA224116", "biosample": "SAMN10963504", "wgs_master": "SJJZ00000000.1", "refseq_category": "reference genome", "taxid": "1124743", "species_taxid": "1124743", "organism_name": "Kribbella soli", "infraspecific_name": "strain=KCTC 29219", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/06", "asm_name": "ASM433134v1", "asm_submitter": "University of Cape Town", "gbrs_paired_asm": "GCA_004331345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/331/345/GCF_004331345.1_ASM433134v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8785001", "genome_size_ungapped": "8785001", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004331345.1-RS_2024_03_21", "annotation_date": "2024-03-21", "total_gene_count": "8486", "protein_coding_gene_count": "8393", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-06", "dateModified": "2019-03-06", "datePublished": "2019-03-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Kribbella soli" ], "sample_taxid": [ "1124743" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Moscow" ], "sample_host_location_id": [], "data_size": "2.378 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8785001", "Number of Sequences": "10", "Longest Sequences (bp)": "2825443", "N50 (bp)": "1861369", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.4", "Number of CDSs": "8526", "Average Protein Length": "318.8", "Coding Ratio (%)": "92.8", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kribbella soli", "strain": "strain=KCTC 29219", "accession": "GCA_004331345.1", "taxid": 1124743, "species_taxid": 1124743, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2922, "total_fragments": 2922, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kribbella sindirgiensis", "strain": "strain=DSM 27082", "accession": "GCA_004331435.1", "taxid": 1124744, "species_taxid": 1124744, "relation_to_type": "type", "validated": true, "ani": 91.9964, "matched_fragments": 2420, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 91.9878, "matched_fragments": 2490, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella shirazensis", "strain": "strain=DSM 45490", "accession": "GCA_011761605.1", "taxid": 1105143, "species_taxid": 1105143, "relation_to_type": "type", "validated": true, "ani": 88.2114, "matched_fragments": 2232, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella aluminosa", "strain": "strain=DSM 18824", "accession": "GCA_017876295.1", "taxid": 416017, "species_taxid": 416017, "relation_to_type": "type", "validated": true, "ani": 87.219, "matched_fragments": 2100, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 87.144, "matched_fragments": 2124, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jejuensis", "strain": "strain=DSM 17305", "accession": "GCA_006715085.1", "taxid": 236068, "species_taxid": 236068, "relation_to_type": "type", "validated": true, "ani": 86.7225, "matched_fragments": 1974, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 84.7112, "matched_fragments": 2010, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 84.451, "matched_fragments": 1654, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.6443, "matched_fragments": 582, "total_fragments": 2922, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004331345.1", "gtdb_species": "s__Kribbella soli", "ani": 100.0, "matched_fragments": 2922, "total_fragments": 2922, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004216905.1", "gtdb_species": "s__Kribbella sp004216905", "ani": 93.8256, "matched_fragments": 2495, "total_fragments": 2922, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004366075.1", "gtdb_species": "s__Kribbella sp004366075", "ani": 92.9368, "matched_fragments": 2393, "total_fragments": 2922, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.22", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004331435.1", "gtdb_species": "s__Kribbella sindirgiensis", "ani": 91.9866, "matched_fragments": 2422, "total_fragments": 2922, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.59", "min_intra_species_ani": "95.53", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_011761605.1", "gtdb_species": "s__Kribbella shirazensis", "ani": 88.2169, "matched_fragments": 2231, "total_fragments": 2922, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876295.1", "gtdb_species": "s__Kribbella aluminosa", "ani": 87.2211, "matched_fragments": 2100, "total_fragments": 2922, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005233875.1", "gtdb_species": "s__Kribbella sp005233875", "ani": 87.1372, "matched_fragments": 2123, "total_fragments": 2922, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 28.295, "optimum_tmp": 29.25, "optimum_ph": 7.093, "genome_size": 8603649.2, "gc_content": 69.05, "coding_genes": 6915.0, "rRNA16S_genes": 2.0, "tRNA_genes": 51.0, "gram_stain": 1.0, "sporulation": 0.9, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.9, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.1, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kribbella", "soli" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }