{
    "type": "genome",
    "identifier": "GCF_004331415.1",
    "organism": "Kosakonia quasisacchari",
    "title": "Kosakonia quasisacchari",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "West China Hospital, Sichuan University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004331415.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10995740",
        "wgs_master": "SJOP00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2529380",
        "species_taxid": "2529380",
        "organism_name": "Kosakonia quasisacchari",
        "infraspecific_name": "strain=WCHEs120001",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/06",
        "asm_name": "ASM433141v1",
        "asm_submitter": "West China Hospital, Sichuan University",
        "gbrs_paired_asm": "GCA_004331415.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/331/415/GCF_004331415.1_ASM433141v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5149797",
        "genome_size_ungapped": "5149797",
        "gc_percent": "53.500000",
        "replicon_count": "0",
        "scaffold_count": "106",
        "contig_count": "106",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004331415.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4949",
        "protein_coding_gene_count": "4780",
        "non_coding_gene_count": "88",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-06",
    "dateModified": "2019-03-06",
    "datePublished": "2019-03-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kosakonia quasisacchari"
        ],
        "sample_taxid": [
            "2529380"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Chengdu, Sichuan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.463 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.48,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5149797",
        "Number of Sequences": "106",
        "Longest Sequences (bp)": "442882",
        "N50 (bp)": "209795",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.3",
        "Number of CDSs": "4753",
        "Average Protein Length": "313.8",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "73",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Kosakonia quasisacchari",
                "strain": "strain=WCHEs120001",
                "accession": "GCA_004331415.1",
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                "species_taxid": 2529380,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1675,
                "total_fragments": 1677,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kosakonia sacchari",
                "strain": "strain=CGMCC 1.12102",
                "accession": "GCA_900100995.1",
                "taxid": 1158459,
                "species_taxid": 1158459,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2546,
                "matched_fragments": 1494,
                "total_fragments": 1677,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia sacchari",
                "strain": "strain=SP1",
                "accession": "GCA_000300455.4",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia pseudosacchari",
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                "accession": "GCA_900184035.1",
                "taxid": 1646340,
                "species_taxid": 1646340,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6853,
                "matched_fragments": 1499,
                "total_fragments": 1677,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia oryzae",
                "strain": "strain=Ola 51",
                "accession": "GCA_001658025.2",
                "taxid": 497725,
                "species_taxid": 497725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7896,
                "matched_fragments": 1305,
                "total_fragments": 1677,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia oryzendophytica",
                "strain": "strain=REICA_082",
                "accession": "GCA_900094925.1",
                "taxid": 1005665,
                "species_taxid": 1005665,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1207,
                "matched_fragments": 1209,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia cowanii",
                "strain": "strain=888-76",
                "accession": "GCA_001975225.1",
                "taxid": 208223,
                "species_taxid": 208223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6293,
                "matched_fragments": 1133,
                "total_fragments": 1677,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
                "accession": "GCA_019048245.1",
                "taxid": 158836,
                "species_taxid": 158836,
                "relation_to_type": "suspected-type",
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                "ani": 81.32,
                "matched_fragments": 850,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
                "species_taxid": 1812935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2848,
                "matched_fragments": 836,
                "total_fragments": 1677,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudocitrobacter corydidari",
                "strain": "",
                "accession": "GCA_021172065.1",
                "taxid": 2891570,
                "species_taxid": 2891570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1988,
                "matched_fragments": 832,
                "total_fragments": 1677,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter sichuanensis",
                "strain": "strain=WCHECL1597",
                "accession": "GCA_025002605.1",
                "taxid": 2071710,
                "species_taxid": 2071710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1924,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1648,
                "matched_fragments": 875,
                "total_fragments": 1677,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.48,
            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_004331415.1",
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                "total_fragments": 1677,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kosakonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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                "accession": "GCF_000300455.3",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kosakonia",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000410515.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kosakonia",
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            },
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            },
            {
                "accession": "GCF_000814905.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "num_clustered_genomes": 21,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "quasisacchari"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}