{ "type": "genome", "identifier": "GCF_004337475.1", "organism": "Nocardioides jejuensis", "title": "Nocardioides jejuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004337475.1", "bioproject": "PRJNA224116", "biosample": "SAMN10716006", "wgs_master": "SJZJ00000000.1", "refseq_category": "reference genome", "taxid": "2502782", "species_taxid": "2502782", "organism_name": "Nocardioides jejuensis", "infraspecific_name": "strain=18JY15-6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/10", "asm_name": "ASM433747v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_004337475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/337/475/GCF_004337475.1_ASM433747v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3246243", "genome_size_ungapped": "3246243", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004337475.1-RS_2024_04_17", "annotation_date": "2024-04-17", "total_gene_count": "3262", "protein_coding_gene_count": "3192", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-10", "dateModified": "2019-03-10", "datePublished": "2019-03-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides jejuensis" ], "sample_taxid": [ "2502782" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seoul" ], "sample_host_location_id": [], "data_size": "0.871 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3246243", "Number of Sequences": "56", "Longest Sequences (bp)": "287825", "N50 (bp)": "114456", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.1", "Number of CDSs": "3181", "Average Protein Length": "314.4", "Coding Ratio (%)": "92.4", "Number of rRNAs": "5", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides jejuensis", "strain": "strain=18JY15-6", "accession": "GCA_004337475.1", "taxid": 2502782, "species_taxid": 2502782, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1049, "total_fragments": 1054, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides phosphati", "strain": "strain=CGMCC 4.7371", "accession": "GCA_014646375.1", "taxid": 1867775, "species_taxid": 1867775, "relation_to_type": "type", "validated": true, "ani": 86.3642, "matched_fragments": 824, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernaquae", "strain": "strain=K1W22B-1", "accession": "GCA_003600895.1", "taxid": 2321396, "species_taxid": 2321396, "relation_to_type": "type", "validated": true, "ani": 82.9425, "matched_fragments": 690, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides nematodiphilus", "strain": "strain=R-N-C8", "accession": "GCA_020216525.1", "taxid": 2849669, "species_taxid": 2849669, "relation_to_type": "type", "validated": true, "ani": 80.3534, "matched_fragments": 486, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides guangzhouensis", "strain": "strain=130", "accession": "GCA_004519545.1", "taxid": 2497878, "species_taxid": 2497878, "relation_to_type": "type", "validated": true, "ani": 79.937, "matched_fragments": 518, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 79.9331, "matched_fragments": 500, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides jensenii", "strain": "strain=NBRC 14755", "accession": "GCA_001552535.1", "taxid": 1843, "species_taxid": 1843, "relation_to_type": "type", "validated": true, "ani": 79.9026, "matched_fragments": 483, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 79.8898, "matched_fragments": 491, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humilatus", "strain": "strain=BN130099", "accession": "GCA_008373755.1", "taxid": 2607660, "species_taxid": 2607660, "relation_to_type": "type", "validated": true, "ani": 79.8783, "matched_fragments": 525, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides glacieisoli", "strain": "strain=HLT3-15", "accession": "GCA_004137245.1", "taxid": 1168730, "species_taxid": 1168730, "relation_to_type": "type", "validated": true, "ani": 79.8158, "matched_fragments": 487, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides alpinus", "strain": "strain=DSM 23325", "accession": "GCA_002836395.1", "taxid": 748909, "species_taxid": 748909, "relation_to_type": "type", "validated": true, "ani": 79.8025, "matched_fragments": 483, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides alpinus", "strain": "strain=CGMCC 1.10697", "accession": "GCA_900112035.1", "taxid": 748909, "species_taxid": 748909, "relation_to_type": "type", "validated": true, "ani": 79.7892, "matched_fragments": 478, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides zhouii", "strain": "strain=HLT2-9", "accession": "GCA_004137345.1", "taxid": 1168729, "species_taxid": 1168729, "relation_to_type": "type", "validated": true, "ani": 79.7453, "matched_fragments": 479, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides carbamazepini", "strain": "strain=CBZ_1", "accession": "GCA_024614185.1", "taxid": 2854259, "species_taxid": 2854259, "relation_to_type": "type", "validated": true, "ani": 79.7238, "matched_fragments": 518, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, "relation_to_type": "type", "validated": true, "ani": 79.6731, "matched_fragments": 485, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides jishulii", "strain": "strain=dk3136", "accession": "GCA_006007965.1", "taxid": 2575440, "species_taxid": 2575440, "relation_to_type": "type", "validated": true, "ani": 79.6687, "matched_fragments": 434, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides alkalitolerans", "strain": "strain=DSM 16699", "accession": "GCA_000426525.1", "taxid": 281714, "species_taxid": 281714, "relation_to_type": "type", "validated": true, "ani": 79.664, "matched_fragments": 475, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 79.5587, "matched_fragments": 484, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004337475.1", "gtdb_species": "s__Nocardioides jejuensis", "ani": 100.0, "matched_fragments": 1049, "total_fragments": 1054, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": 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