{ "type": "genome", "identifier": "GCF_004337505.1", "organism": "Flaviaesturariibacter flavus", "title": "Flaviaesturariibacter flavus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004337505.1", "bioproject": "PRJNA224116", "biosample": "SAMN10716001", "wgs_master": "SJZI00000000.1", "refseq_category": "reference genome", "taxid": "2502780", "species_taxid": "2502780", "organism_name": "Flaviaesturariibacter flavus", "infraspecific_name": "strain=17J68-12", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/10", "asm_name": "ASM433750v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_004337505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/337/505/GCF_004337505.1_ASM433750v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3958893", "genome_size_ungapped": "3958569", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004337505.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3408", "protein_coding_gene_count": "3331", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-10", "dateModified": "2019-03-10", "datePublished": "2019-03-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Flaviaesturariibacter flavus" ], "sample_taxid": [ "2502780" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seoul" ], "sample_host_location_id": [], "data_size": "1.116 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3958893", "Number of Sequences": "52", "Longest Sequences (bp)": "864967", "N50 (bp)": "376267", "Gap Ratio (%)": "0.008184", "GCcontent (%)": "57.6", "Number of CDSs": "3299", "Average Protein Length": "345.2", "Coding Ratio (%)": "86.3", "Number of rRNAs": "6", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flaviaesturariibacter flavus", "strain": "strain=17J68-12", "accession": "GCA_004337505.1", "taxid": 2502780, "species_taxid": 2502780, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1292, "total_fragments": 1296, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flaviaesturariibacter aridisoli", "strain": "strain=17J68-15", "accession": "GCA_004343705.1", "taxid": 2545761, "species_taxid": 2545761, "relation_to_type": "type", "validated": true, "ani": 80.7985, "matched_fragments": 724, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cnuella takakiae", "strain": "strain=RG1-1", "accession": "GCA_001953305.1", "taxid": 1302690, "species_taxid": 1302690, "relation_to_type": "type", "validated": true, "ani": 77.2874, "matched_fragments": 204, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cnuella takakiae", "strain": "strain=DSM 26897", "accession": "GCA_900129015.1", "taxid": 1302690, "species_taxid": 1302690, "relation_to_type": "type", "validated": true, "ani": 77.2454, "matched_fragments": 203, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavisolibacter nicotianae", "strain": "strain=X7X", "accession": "GCA_003628535.1", "taxid": 2364882, "species_taxid": 2364882, "relation_to_type": "type", "validated": true, "ani": 76.7919, "matched_fragments": 157, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=GR20-10", "accession": "GCA_000246855.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 76.2573, "matched_fragments": 54, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga parva", "strain": "strain=LY-1", "accession": "GCA_003071345.1", "taxid": 2169414, "species_taxid": 2169414, "relation_to_type": "type", "validated": true, "ani": 76.1885, "matched_fragments": 90, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puia dinghuensis", "strain": "strain=CGMCC 1.15448", "accession": "GCA_014642875.1", "taxid": 1792502, "species_taxid": 1792502, "relation_to_type": "type", "validated": true, "ani": 76.0227, "matched_fragments": 69, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=DSM 17620", "accession": "GCA_002077985.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 75.6956, "matched_fragments": 53, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004337505.1", "gtdb_species": "s__Flaviaesturariibacter flavus", "ani": 100.0, "matched_fragments": 1293, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flaviaesturariibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004343705.1", "gtdb_species": "s__Flaviaesturariibacter aridisoli", "ani": 80.7777, "matched_fragments": 726, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flaviaesturariibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004173235.1", "gtdb_species": "s__Flaviaesturariibacter sp004173235", "ani": 79.1882, "matched_fragments": 581, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flaviaesturariibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001953305.1", "gtdb_species": "s__Cnuella takakiae", "ani": 77.2874, "matched_fragments": 204, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Cnuella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003628535.1", "gtdb_species": "s__Flavisolibacter nicotianae", "ani": 76.7919, "matched_fragments": 157, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003332885.2", "gtdb_species": "s__Paracnuella aquatica", "ani": 76.6313, "matched_fragments": 164, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Paracnuella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.63", "min_intra_species_ani": "95.63", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014163555.1", "gtdb_species": "s__Flavisolibacter sp014163555", "ani": 76.5805, "matched_fragments": 103, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007970805.1", "gtdb_species": "s__Flavisolibacter ginsenosidimutans", "ani": 76.303, "matched_fragments": 110, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003243445.1", "gtdb_species": "s__46-32 sp003243445", "ani": 76.1213, "matched_fragments": 58, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__46-32", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014642875.1", "gtdb_species": "s__Puia dinghuensis", "ani": 76.0227, "matched_fragments": 69, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Puia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016219985.1", "gtdb_species": "s__JJ008 sp016219985", "ani": 75.7614, "matched_fragments": 75, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Flaviaesturariibacter", "flavus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }