{ "type": "genome", "identifier": "GCF_004339465.1", "organism": "Ancylobacter aquaticus", "title": "Ancylobacter aquaticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004339465.1", "bioproject": "PRJNA224116", "biosample": "SAMN10866377", "wgs_master": "SMFY00000000.1", "refseq_category": "reference genome", "taxid": "100", "species_taxid": "100", "organism_name": "Ancylobacter aquaticus", "infraspecific_name": "strain=DSM 101", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM433946v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004339465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/339/465/GCF_004339465.1_ASM433946v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4831989", "genome_size_ungapped": "4831989", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004339465.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "4513", "protein_coding_gene_count": "4381", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Ancylobacter aquaticus" ], "sample_taxid": [ "100" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.321 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4831989", "Number of Sequences": "11", "Longest Sequences (bp)": "2018560", "N50 (bp)": "1391578", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.0", "Number of CDSs": "4520", "Average Protein Length": "317.3", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ancylobacter aquaticus", "strain": "strain=DSM 101", "accession": "GCA_004339465.1", "taxid": 100, "species_taxid": 100, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1605, "total_fragments": 1605, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ancylobacter rudongensis", "strain": "strain=CGMCC 1.1761", "accession": "GCA_900100155.1", "taxid": 177413, "species_taxid": 177413, "relation_to_type": "type", "validated": true, "ani": 90.2977, "matched_fragments": 1242, "total_fragments": 1605, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter dichloromethanicus", "strain": "strain=VKM B-2484", "accession": "GCA_018390645.1", "taxid": 518825, "species_taxid": 518825, "relation_to_type": "type", "validated": true, "ani": 88.2345, "matched_fragments": 1156, "total_fragments": 1605, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 85.4773, "matched_fragments": 1013, "total_fragments": 1605, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 84.8724, "matched_fragments": 1048, "total_fragments": 1605, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter oerskovii", "strain": "strain=CCM 7435", "accession": "GCA_018390555.1", "taxid": 459519, "species_taxid": 459519, "relation_to_type": "type", "validated": true, "ani": 83.1667, "matched_fragments": 957, "total_fragments": 1605, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 2683706, "species_taxid": 2683706, "relation_to_type": "type", "validated": true, "ani": 77.3561, "matched_fragments": 384, "total_fragments": 1605, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 77.2488, "matched_fragments": 452, "total_fragments": 1605, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 76.8812, "matched_fragments": 433, "total_fragments": 1605, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas phyllosphaerae", "strain": "strain=DSM 25024", "accession": "GCA_014196405.1", "taxid": 1166078, "species_taxid": 1166078, "relation_to_type": "type", "validated": true, "ani": 76.8599, "matched_fragments": 283, "total_fragments": 1605, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella aestuarii", "strain": "strain=JA968", "accession": "GCA_004023665.1", "taxid": 1909496, 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