{ "type": "genome", "identifier": "GCF_004339665.1", "organism": "Azotobacter chroococcum", "title": "Azotobacter chroococcum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004339665.1", "bioproject": "PRJNA224116", "biosample": "SAMN10866327", "wgs_master": "SMMU00000000.1", "refseq_category": "na", "taxid": "353", "species_taxid": "353", "organism_name": "Azotobacter chroococcum", "infraspecific_name": "strain=DSM 2286", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM433966v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004339665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/339/665/GCF_004339665.1_ASM433966v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4859997", "genome_size_ungapped": "4859610", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "99", "contig_count": "99", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004339665.1-RS_2024_04_17", "annotation_date": "2024-04-17", "total_gene_count": "4651", "protein_coding_gene_count": "4443", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Azotobacter chroococcum" ], "sample_taxid": [ "353" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.338 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4859997", "Number of Sequences": "99", "Longest Sequences (bp)": "443280", "N50 (bp)": "144574", "Gap Ratio (%)": "0.007963", "GCcontent (%)": "66.1", "Number of CDSs": "4516", "Average Protein Length": "311.3", "Coding Ratio (%)": "86.8", "Number of rRNAs": "2", "Number of tRNAs": "62", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Azotobacter chroococcum", "strain": "strain=DSM 2286", "accession": "GCA_004339665.1", "taxid": 353, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1570, "total_fragments": 1572, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Azotobacter chroococcum", "strain": "strain=ATCC 9043", "accession": "GCA_004327905.1", "taxid": 353, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 99.9974, "matched_fragments": 1572, "total_fragments": 1572, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Azotobacter chroococcum subsp. isscasi", "strain": "strain=P205", "accession": "GCA_004327895.1", "taxid": 2528971, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 96.1346, "matched_fragments": 1364, "total_fragments": 1572, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Azotobacter beijerinckii", "strain": "strain=DSM 378", "accession": "GCA_900110885.1", "taxid": 170623, "species_taxid": 170623, "relation_to_type": "type", "validated": true, "ani": 91.2517, "matched_fragments": 1165, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 83.8263, "matched_fragments": 818, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 83.7457, "matched_fragments": 788, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 83.1537, "matched_fragments": 756, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas carbonaria", "strain": "strain=CIP 111764", "accession": "GCA_904061905.1", "taxid": 2762745, "species_taxid": 2762745, "relation_to_type": "type", "validated": true, "ani": 82.8836, "matched_fragments": 788, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 82.8411, "matched_fragments": 702, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 82.327, "matched_fragments": 738, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_000802425.1", "taxid": 706570, 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