{ "type": "genome", "identifier": "GCF_004339675.1", "organism": "Rhodovulum steppense", "title": "Rhodovulum steppense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004339675.1", "bioproject": "PRJNA224116", "biosample": "SAMN10864697", "wgs_master": "SLVM00000000.1", "refseq_category": "reference genome", "taxid": "540251", "species_taxid": "540251", "organism_name": "Rhodovulum steppense", "infraspecific_name": "strain=DSM 21153", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM433967v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004339675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/339/675/GCF_004339675.1_ASM433967v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3665949", "genome_size_ungapped": "3665949", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004339675.1-RS_2024_04_17", "annotation_date": "2024-04-17", "total_gene_count": "3660", "protein_coding_gene_count": "3539", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodovulum steppense" ], "sample_taxid": [ "540251" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.002 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3665949", "Number of Sequences": "71", "Longest Sequences (bp)": "236556", "N50 (bp)": "122598", "Gap Ratio (%)": "0.000164", "GCcontent (%)": "67.3", "Number of CDSs": "3617", "Average Protein Length": "302.6", "Coding Ratio (%)": "89.6", "Number of rRNAs": "2", "Number of tRNAs": "46", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1180, "total_fragments": 1187, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 95.3272, "matched_fragments": 959, "total_fragments": 1187, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 91.2494, "matched_fragments": 923, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 85.8867, "matched_fragments": 866, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum marinum", "strain": "strain=DSM 18063", "accession": "GCA_004343075.1", "taxid": 320662, "species_taxid": 320662, "relation_to_type": "type", "validated": true, "ani": 84.4174, "matched_fragments": 847, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum visakhapatnamense", "strain": "strain=JA181", "accession": "GCA_004365965.1", "taxid": 364297, "species_taxid": 364297, "relation_to_type": "type", "validated": true, "ani": 82.176, "matched_fragments": 780, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum adriaticum", "strain": "strain=DSM 2781", "accession": "GCA_016583705.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 81.6585, "matched_fragments": 644, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Rhodovulum", "steppense" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }