{
    "type": "genome",
    "identifier": "GCF_004340805.1",
    "organism": "Roseivirga ehrenbergii",
    "title": "Roseivirga ehrenbergii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004340805.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10864729",
        "wgs_master": "SMGS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "279360",
        "species_taxid": "279360",
        "organism_name": "Roseivirga ehrenbergii",
        "infraspecific_name": "strain=DSM 102268",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/11",
        "asm_name": "ASM434080v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_004340805.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/340/805/GCF_004340805.1_ASM434080v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4251438",
        "genome_size_ungapped": "4251146",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004340805.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "3715",
        "protein_coding_gene_count": "3666",
        "non_coding_gene_count": "43",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-11",
    "dateModified": "2019-03-11",
    "datePublished": "2019-03-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Roseivirga ehrenbergii"
        ],
        "sample_taxid": [
            "279360"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.202 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4251438",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "1525600",
        "N50 (bp)": "682704",
        "Gap Ratio (%)": "0.006868",
        "GCcontent (%)": "39.3",
        "Number of CDSs": "3646",
        "Average Protein Length": "346.1",
        "Coding Ratio (%)": "89.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Roseivirga ehrenbergii",
                "strain": "strain=DSM 102268",
                "accession": "GCA_004340805.1",
                "taxid": 279360,
                "species_taxid": 279360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1412,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Roseivirga ehrenbergii",
                "strain": "strain=KMM 6017",
                "accession": "GCA_001593005.1",
                "taxid": 279360,
                "species_taxid": 279360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9878,
                "matched_fragments": 1396,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Roseivirga seohaensis subsp. aquiponti",
                "strain": "strain=D-25",
                "accession": "GCA_001267955.1",
                "taxid": 1566026,
                "species_taxid": 1914963,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2245,
                "matched_fragments": 1169,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivirga seohaensis",
                "strain": "strain=SW-152",
                "accession": "GCA_001592945.1",
                "taxid": 1914963,
                "species_taxid": 1914963,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1056,
                "matched_fragments": 1172,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivirga echinicomitans",
                "strain": "strain=KMM 6058",
                "accession": "GCA_001592935.1",
                "taxid": 296218,
                "species_taxid": 296218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0491,
                "matched_fragments": 1047,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001593005.1",
                "gtdb_species": "s__Roseivirga ehrenbergii",
                "ani": 99.9878,
                "matched_fragments": 1396,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Roseivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001592945.1",
                "gtdb_species": "s__Roseivirga seohaensis",
                "ani": 93.1056,
                "matched_fragments": 1172,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Roseivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.29",
                "min_intra_species_ani": "97.29",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001592935.1",
                "gtdb_species": "s__Roseivirga echinicomitans",
                "ani": 86.038,
                "matched_fragments": 1048,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Roseivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002786855.1",
                "gtdb_species": "s__Roseivirga sp002786855",
                "ani": 78.0299,
                "matched_fragments": 356,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Roseivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001592965.1",
                "gtdb_species": "s__Fabibacter spongicola",
                "ani": 77.0312,
                "matched_fragments": 165,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.73",
                "min_intra_species_ani": "96.54",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_002427755.1",
                "gtdb_species": "s__Fabibacter sp002427755",
                "ani": 76.8681,
                "matched_fragments": 97,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001747105.1",
                "gtdb_species": "s__Fabibacter misakiensis",
                "ani": 76.7844,
                "matched_fragments": 103,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111145.1",
                "gtdb_species": "s__Fabibacter pacificus",
                "ani": 76.7463,
                "matched_fragments": 148,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017592825.1",
                "gtdb_species": "s__Fabibacter sp017592825",
                "ani": 76.6804,
                "matched_fragments": 110,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014653175.1",
                "gtdb_species": "s__Fabibacter thermotolerans",
                "ani": 76.6396,
                "matched_fragments": 118,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.67",
                "min_intra_species_ani": "98.61",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.322,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 23.5,
        "optimum_ph": null,
        "genome_size": 4198847.5,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Roseivirga",
        "ehrenbergii"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}