{ "type": "genome", "identifier": "GCF_004340875.1", "organism": "Tamaricihabitans halophyticus", "title": "Tamaricihabitans halophyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004340875.1", "bioproject": "PRJNA224116", "biosample": "SAMN10864761", "wgs_master": "SLXQ00000000.1", "refseq_category": "reference genome", "taxid": "1262583", "species_taxid": "1262583", "organism_name": "Tamaricihabitans halophyticus", "infraspecific_name": "strain=DSM 45765", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM434087v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004340875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/340/875/GCF_004340875.1_ASM434087v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6397398", "genome_size_ungapped": "6397398", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004340875.1-RS_2024_04_17", "annotation_date": "2024-04-17", "total_gene_count": "6017", "protein_coding_gene_count": "5921", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Tamaricihabitans halophyticus" ], "sample_taxid": [ "1262583" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.767 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6397398", "Number of Sequences": "50", "Longest Sequences (bp)": "1539093", "N50 (bp)": "338205", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.2", "Number of CDSs": "5989", "Average Protein Length": "322.3", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tamaricihabitans halophyticus", "strain": "strain=DSM 45765", "accession": "GCA_004340875.1", "taxid": 1262583, "species_taxid": 1262583, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"below_threshold" }, { "organism_name": "Amycolatopsis viridis", "strain": "strain=DSM 45668", "accession": "GCA_011758765.1", "taxid": 185678, "species_taxid": 185678, "relation_to_type": "type", "validated": true, "ani": 77.4566, "matched_fragments": 477, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis albispora", "strain": "strain=WP1", "accession": "GCA_003312875.1", "taxid": 1804986, "species_taxid": 1804986, "relation_to_type": "type", "validated": true, "ani": 77.394, "matched_fragments": 612, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis rhizosphaerae", "strain": "strain=TBRC 6029", "accession": "GCA_007713715.1", "taxid": 2053003, "species_taxid": 2053003, "relation_to_type": "type", "validated": true, "ani": 77.3828, "matched_fragments": 423, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 77.3673, "matched_fragments": 519, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptoalloteichus tenebrarius", "strain": "strain=DSM 40477", "accession": "GCA_024171885.1", "taxid": 1933, "species_taxid": 1933, "relation_to_type": "type", "validated": true, "ani": 77.2661, "matched_fragments": 396, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 77.2222, "matched_fragments": 524, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 77.1947, "matched_fragments": 524, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis vastitatis", "strain": "strain=H5", "accession": "GCA_002234595.1", "taxid": 1905142, "species_taxid": 1905142, "relation_to_type": "type", "validated": true, "ani": 77.1892, "matched_fragments": 496, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinophytocola xanthii", "strain": "strain=11-183", "accession": "GCA_001921205.1", "taxid": 1912961, "species_taxid": 1912961, "relation_to_type": "type", "validated": true, "ani": 77.1846, "matched_fragments": 453, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 77.1684, "matched_fragments": 409, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermoflava", "strain": "strain=N1165", "accession": "GCA_000473265.1", "taxid": 84480, "species_taxid": 84480, "relation_to_type": "type", "validated": true, "ani": 77.1548, "matched_fragments": 561, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora auranticolor", "strain": "strain=YU 961-1", "accession": "GCA_002934265.1", "taxid": 155976, "species_taxid": 155976, "relation_to_type": "type", "validated": true, "ani": 77.1488, "matched_fragments": 420, "total_fragments": 2108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": 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