{ "tc_result": [ { "organism_name": "Cricetibacter osteomyelitidis", "strain": "strain=DSM 28404", "accession": "GCA_004340985.1", "taxid": 1521931, "species_taxid": 1521931, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 873, "total_fragments": 876, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pasteurella multocida subsp. gallicida", "strain": "strain=NCTC10204", "accession": "GCA_900636625.1", "taxid": 123812, "species_taxid": 747, "relation_to_type": "type", "validated": true, "ani": 78.0228, "matched_fragments": 150, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella canis", "strain": "strain=NCTC11621", "accession": "GCA_900454865.1", "taxid": 753, "species_taxid": 753, "relation_to_type": "type", "validated": true, "ani": 78.0168, "matched_fragments": 133, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella multocida", "strain": "strain=NCTC10322", "accession": "GCA_900187275.1", "taxid": 747, "species_taxid": 747, "relation_to_type": "type", "validated": true, "ani": 77.9726, "matched_fragments": 148, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella multocida subsp. septica", "strain": "strain=NCTC11995", "accession": "GCA_900454845.1", "taxid": 115545, "species_taxid": 747, "relation_to_type": "type", "validated": true, "ani": 77.9684, "matched_fragments": 157, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella multocida", "strain": "strain=ATCC 43137", "accession": "GCA_000754275.1", "taxid": 747, "species_taxid": 747, "relation_to_type": "type", "validated": true, "ani": 77.944, "matched_fragments": 148, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus porcinus", "strain": "strain=NM319", "accession": "GCA_901764995.1", "taxid": 51048, "species_taxid": 51048, "relation_to_type": "type", "validated": true, "ani": 77.9067, "matched_fragments": 192, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus porcinus", "strain": "strain=NM319", "accession": "GCA_900773985.1", "taxid": 51048, "species_taxid": 51048, "relation_to_type": "type", "validated": true, "ani": 77.8887, "matched_fragments": 193, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatibacter actinomycetemcomitans", "strain": "strain=DSM 8324", "accession": "GCA_000372365.1", "taxid": 714, "species_taxid": 714, "relation_to_type": "type", "validated": true, "ani": 77.8642, "matched_fragments": 182, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatibacter actinomycetemcomitans", "strain": "strain=NCTC_9710", "accession": "GCA_008085305.1", "taxid": 714, "species_taxid": 714, "relation_to_type": "type", "validated": true, "ani": 77.8469, "matched_fragments": 181, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatibacter aphrophilus", "strain": "strain=NCTC5906", "accession": "GCA_900636915.1", "taxid": 732, "species_taxid": 732, "relation_to_type": "type", "validated": true, "ani": 77.8464, "matched_fragments": 208, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium gallinarum", "strain": "strain=NCTC11188", "accession": "GCA_900454485.1", "taxid": 755, "species_taxid": 755, "relation_to_type": "type", "validated": true, "ani": 77.8357, "matched_fragments": 194, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatibacter kilianii", "strain": "strain=PN_528", "accession": "GCA_003130255.1", "taxid": 2025884, "species_taxid": 2025884, "relation_to_type": "type", "validated": true, "ani": 77.8356, "matched_fragments": 207, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Avibacterium gallinarum", "strain": "strain=NCTC 11188", "accession": "GCA_002921135.1", "taxid": 755, "species_taxid": 755, "relation_to_type": "type", "validated": true, "ani": 77.8302, "matched_fragments": 191, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus seminis", "strain": "strain=NCTC10851", "accession": "GCA_900460625.1", "taxid": 722, "species_taxid": 722, "relation_to_type": "type", "validated": true, "ani": 77.7588, "matched_fragments": 196, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus pleuropneumoniae", "strain": "strain=S4074", "accession": "GCA_003290385.1", "taxid": 715, "species_taxid": 715, "relation_to_type": "type", "validated": true, "ani": 77.7286, "matched_fragments": 168, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus pleuropneumoniae", "strain": "strain=4074", "accession": "GCA_000178495.2", "taxid": 715, "species_taxid": 715, "relation_to_type": "type", "validated": true, "ani": 77.6742, "matched_fragments": 168, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus seminis", "strain": "strain=ATCC 15768", "accession": "GCA_002263215.1", "taxid": 722, "species_taxid": 722, "relation_to_type": "type", "validated": true, "ani": 77.6484, "matched_fragments": 199, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesocricetibacter intestinalis", "strain": "strain=DSM 28403", "accession": "GCA_004363295.1", "taxid": 1521930, "species_taxid": 1521930, "relation_to_type": "type", "validated": true, "ani": 77.3811, "matched_fragments": 153, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004340985.1", "gtdb_species": "s__Cricetibacter osteomyelitidis", "ani": 100.0, "matched_fragments": 873, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Cricetibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_901420285.1", "gtdb_species": "s__Rodentibacter sp901420285", "ani": 78.0441, "matched_fragments": 173, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900637275.1", "gtdb_species": "s__Actinobacillus_B aerogenes", "ani": 77.9925, "matched_fragments": 213, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001999305.1", "gtdb_species": "s__Rodentibacter myodis", "ani": 77.9872, "matched_fragments": 224, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900454865.1", "gtdb_species": "s__Pasteurella canis", "ani": 77.9837, "matched_fragments": 135, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Pasteurella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.76", "min_intra_species_ani": "98.68", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900187275.1", "gtdb_species": "s__Pasteurella multocida", "ani": 77.9742, "matched_fragments": 148, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Pasteurella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "96.53", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.57", "num_clustered_genomes": 288, "status": "-" }, { "accession": "GCF_017160915.1", "gtdb_species": "s__Aggregatibacter actinomycetemcomitans_B", "ani": 77.9539, "matched_fragments": 227, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002015125.1", "gtdb_species": "s__Pasteurella felis", "ani": 77.9348, "matched_fragments": 140, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Pasteurella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.37", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003129965.1", "gtdb_species": "s__Aggregatibacter kilianii_A", "ani": 77.9264, "matched_fragments": 211, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_901764995.1", "gtdb_species": "s__Basfia_A porcinus", "ani": 77.9067, "matched_fragments": 192, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Basfia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000973525.1", "gtdb_species": "s__Pasteurella multocida_A", "ani": 77.8925, "matched_fragments": 157, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Pasteurella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000372365.1", "gtdb_species": "s__Aggregatibacter actinomycetemcomitans", "ani": 77.887, "matched_fragments": 182, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 80, "status": "-" }, { "accession": "GCF_003130255.1", "gtdb_species": "s__Aggregatibacter kilianii", "ani": 77.8472, "matched_fragments": 205, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_900444945.1", "gtdb_species": "s__Actinobacillus lignieresii", "ani": 77.8378, "matched_fragments": 166, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.69", "min_intra_species_ani": "96.41", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 35, "status": "-" }, { "accession": "GCF_002921135.1", "gtdb_species": "s__Avibacterium gallinarum", "ani": 77.8242, "matched_fragments": 192, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Avibacterium", "ani_circumscription_radius": 95.623, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003253005.1", "gtdb_species": "s__Haemophilus_D parainfluenzae_M", "ani": 77.761, "matched_fragments": 168, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.35", "min_intra_species_ani": "95.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_003130205.1", "gtdb_species": "s__Aggregatibacter actinomycetemcomitans_A", "ani": 77.7191, "matched_fragments": 199, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "96.75", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_002000485.1", "gtdb_species": "s__Rodentibacter ratti", "ani": 77.6742, "matched_fragments": 180, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.24", "min_intra_species_ani": "96.11", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002263215.1", "gtdb_species": "s__Actinobacillus_B seminis", "ani": 77.6641, "matched_fragments": 198, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000017245.1", "gtdb_species": "s__Basfia_A succinogenes", "ani": 77.5791, "matched_fragments": 202, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Basfia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004363295.1", "gtdb_species": "s__Mesocricetibacter intestinalis", "ani": 77.3894, "matched_fragments": 154, "total_fragments": 876, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Mesocricetibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }