{
    "type": "genome",
    "identifier": "GCF_004341165.1",
    "organism": "Reinekea marinisedimentorum",
    "title": "Reinekea marinisedimentorum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004341165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10984411",
        "wgs_master": "SLZR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "230495",
        "species_taxid": "230495",
        "organism_name": "Reinekea marinisedimentorum",
        "infraspecific_name": "strain=DSM 15388",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/11",
        "asm_name": "ASM434116v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_004341165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/341/165/GCF_004341165.1_ASM434116v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4230836",
        "genome_size_ungapped": "4230035",
        "gc_percent": "50.500000",
        "replicon_count": "0",
        "scaffold_count": "62",
        "contig_count": "62",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004341165.1-RS_2024_04_17",
        "annotation_date": "2024-04-17",
        "total_gene_count": "3832",
        "protein_coding_gene_count": "3763",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-11",
    "dateModified": "2019-03-11",
    "datePublished": "2019-03-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Reinekea marinisedimentorum"
        ],
        "sample_taxid": [
            "230495"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Reineke Island, Peter the Great Bay, Sea of Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.204 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4230836",
        "Number of Sequences": "62",
        "Longest Sequences (bp)": "481729",
        "N50 (bp)": "211471",
        "Gap Ratio (%)": "0.018932",
        "GCcontent (%)": "50.6",
        "Number of CDSs": "3775",
        "Average Protein Length": "330.2",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Reinekea marinisedimentorum",
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                "accession": "GCA_004341165.1",
                "taxid": 230495,
                "species_taxid": 230495,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1376,
                "total_fragments": 1378,
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                "status": "conclusive"
            },
            {
                "organism_name": "Reinekea thalattae",
                "strain": "strain=SSH23",
                "accession": "GCA_008041945.1",
                "taxid": 2593301,
                "species_taxid": 2593301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2539,
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                "total_fragments": 1378,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Reinekea blandensis",
                "strain": "strain=MED297",
                "accession": "GCA_000153185.1",
                "taxid": 374838,
                "species_taxid": 374838,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharospirillum alexandrii",
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                "accession": "GCA_004000275.1",
                "taxid": 2448477,
                "species_taxid": 2448477,
                "relation_to_type": "type",
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                "ani": 76.8747,
                "matched_fragments": 104,
                "total_fragments": 1378,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharospirillum impatiens",
                "strain": "strain=DSM 12546",
                "accession": "GCA_000423605.1",
                "taxid": 169438,
                "species_taxid": 169438,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8031,
                "matched_fragments": 83,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Reinekea forsetii",
                "strain": "strain=Hel1_31_D35",
                "accession": "GCA_002795845.1",
                "taxid": 1336806,
                "species_taxid": 1336806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7925,
                "matched_fragments": 95,
                "total_fragments": 1378,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharospirillum mangrovi",
                "strain": "strain=HK-33",
                "accession": "GCA_003367315.1",
                "taxid": 2161747,
                "species_taxid": 2161747,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5,
                "matched_fragments": 121,
                "total_fragments": 1378,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharospirillum mangrovi",
                "strain": "strain=HK-33",
                "accession": "GCA_003054775.1",
                "taxid": 2161747,
                "species_taxid": 2161747,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4004,
                "matched_fragments": 119,
                "total_fragments": 1378,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004341165.1",
                "gtdb_species": "s__Reinekea marinisedimentorum",
                "ani": 100.0,
                "matched_fragments": 1376,
                "total_fragments": 1378,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Natronospirillaceae;g__Reinekea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_008041945.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Natronospirillaceae;g__Reinekea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000153185.1",
                "gtdb_species": "s__Reinekea blandensis",
                "ani": 77.7473,
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                "total_fragments": 1378,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Natronospirillaceae;g__Reinekea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015687175.1",
                "gtdb_species": "s__Reinekea sp015687175",
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                "matched_fragments": 134,
                "total_fragments": 1378,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Natronospirillaceae;g__Reinekea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_018860385.1",
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                "mean_intra_species_ani": "N/A",
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            },
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                "accession": "GCF_004000275.1",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "matched_fragments": 96,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Natronospirillaceae;g__Saccharospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_002795845.1",
                "gtdb_species": "s__Reinekea forsetii",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Natronospirillaceae;g__Reinekea",
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                "num_clustered_genomes": 7,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.347,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": 33.0,
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        "optimum_ph": null,
        "genome_size": 4230836.0,
        "gc_content": 53.0,
        "coding_genes": 3234.0,
        "rRNA16S_genes": null,
        "tRNA_genes": 51.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": null,
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        "mesophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
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        "marinisedimentorum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}