{ "type": "genome", "identifier": "GCF_004341375.1", "organism": "Rhodothalassium salexigens DSM 2132", "title": "Rhodothalassium salexigens DSM 2132", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004341375.1", "bioproject": "PRJNA224116", "biosample": "SAMN10866323", "wgs_master": "SLXO00000000.1", "refseq_category": "reference genome", "taxid": "1188247", "species_taxid": "1086", "organism_name": "Rhodothalassium salexigens DSM 2132", "infraspecific_name": "strain=DSM 2132", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM434137v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004341375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/341/375/GCF_004341375.1_ASM434137v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3358756", "genome_size_ungapped": "3358562", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004341375.1-RS_2024_04_17", "annotation_date": "2024-04-17", "total_gene_count": "2927", "protein_coding_gene_count": "2854", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodothalassium salexigens DSM 2132" ], "sample_taxid": [ "1188247" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.910 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3358756", "Number of Sequences": "23", "Longest Sequences (bp)": "568237", "N50 (bp)": "303350", "Gap Ratio (%)": "0.005776", "GCcontent (%)": "68.6", "Number of CDSs": "2913", "Average Protein Length": "340.8", "Coding Ratio (%)": "88.7", "Number of rRNAs": "2", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodothalassium salexigens", "strain": "strain=DSM 2132", "accession": "GCA_004341375.1", "taxid": 1086, "species_taxid": 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