{ "type": "genome", "identifier": "GCF_004341645.1", "organism": "Aminobacter aminovorans", "title": "Aminobacter aminovorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004341645.1", "bioproject": "PRJNA224116", "biosample": "SAMN10363400", "wgs_master": "SLZO00000000.1", "refseq_category": "na", "taxid": "83263", "species_taxid": "83263", "organism_name": "Aminobacter aminovorans", "infraspecific_name": "strain=DSM 7048", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM434164v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004341645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/341/645/GCF_004341645.1_ASM434164v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5848363", "genome_size_ungapped": "5848071", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004341645.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "5731", "protein_coding_gene_count": "5595", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Aminobacter aminovorans" ], "sample_taxid": [ "83263" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.620 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5848363", "Number of Sequences": "29", "Longest Sequences (bp)": "924103", "N50 (bp)": "467483", "Gap Ratio (%)": "0.005095", "GCcontent (%)": "63.2", "Number of CDSs": "5671", "Average Protein Length": "302.3", "Coding Ratio (%)": "88.0", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aminobacter aminovorans", "strain": "strain=DSM 7048", "accession": "GCA_004341645.1", "taxid": 83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1935, "total_fragments": 1937, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aminobacter aminovorans", "strain": "strain=NCTC10684", "accession": "GCA_900445235.1", "taxid": 83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 99.9976, "matched_fragments": 1933, "total_fragments": 1937, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aminobacter ciceronei", "strain": "strain=DSM 15910", "accession": "GCA_014138625.1", "taxid": 150723, "species_taxid": 150723, "relation_to_type": "type", "validated": true, "ani": 91.9097, "matched_fragments": 1629, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter ciceronei", "strain": "strain=DSM 17455", "accession": "GCA_014138635.1", "taxid": 150723, "species_taxid": 150723, "relation_to_type": "type", "validated": true, "ani": 91.8713, "matched_fragments": 1630, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aganoensis", "strain": "strain=DSM 7051", "accession": "GCA_014206975.1", "taxid": 83264, "species_taxid": 83264, "relation_to_type": "type", "validated": true, "ani": 86.8062, "matched_fragments": 1306, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter niigataensis", "strain": "strain=DSM 7050", "accession": "GCA_014200015.1", "taxid": 83265, "species_taxid": 83265, "relation_to_type": "type", "validated": true, "ani": 86.7644, "matched_fragments": 1299, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 80.5592, "matched_fragments": 856, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 80.4892, "matched_fragments": 940, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 79.5333, "matched_fragments": 708, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=19-2017", "accession": "GCA_018310375.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 78.9812, "matched_fragments": 651, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 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0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Aminobacter", "aminovorans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }