{ "type": "genome", "identifier": "GCF_004341915.1", "organism": "Chthoniobacter flavus", "title": "Chthoniobacter flavus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004341915.1", "bioproject": "PRJNA224116", "biosample": "SAMN10866388", "wgs_master": "SLWZ00000000.1", "refseq_category": "reference genome", "taxid": "191863", "species_taxid": "191863", "organism_name": "Chthoniobacter flavus", "infraspecific_name": "strain=DSM 22515", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM434191v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004341915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/341/915/GCF_004341915.1_ASM434191v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7793256", "genome_size_ungapped": "7792966", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004341915.1-RS_2024_04_17", "annotation_date": "2024-04-17", "total_gene_count": "6261", "protein_coding_gene_count": "6187", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Chthoniobacter flavus" ], "sample_taxid": [ "191863" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.188 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7793256", "Number of Sequences": "71", "Longest Sequences (bp)": "608546", "N50 (bp)": "261122", "Gap Ratio (%)": "0.003721", "GCcontent (%)": "61.1", "Number of CDSs": "6273", "Average Protein Length": "362.4", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chthoniobacter flavus", "strain": "strain=DSM 22515", "accession": "GCA_004341915.1", "taxid": 191863, "species_taxid": 191863, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2560, "total_fragments": 2562, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chthoniobacter flavus", "strain": "strain=Ellin428", "accession": "GCA_000173075.1", "taxid": 191863, "species_taxid": 191863, "relation_to_type": "type", "validated": true, "ani": 99.9654, "matched_fragments": 2544, "total_fragments": 2562, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Terrimicrobium sacchariphilum", "strain": "strain=NM-5", "accession": "GCA_001613545.1", "taxid": 690879, "species_taxid": 690879, "relation_to_type": "type", "validated": true, "ani": 76.6585, "matched_fragments": 94, "total_fragments": 2562, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=DSM 4136", "accession": "GCA_000172155.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 75.8485, "matched_fragments": 104, "total_fragments": 2562, "ani_threshold": 95, "status": "below_threshold" }, { 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