{ "tc_result": [ { "organism_name": "Paracandidimonas soli", "strain": "strain=DSM 100048", "accession": "GCA_004342005.1", "taxid": 1917182, "species_taxid": 1917182, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1284, "total_fragments": 1286, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Parapusillimonas granuli", "strain": "strain=DSM 18079", "accession": "GCA_014202705.1", "taxid": 380911, "species_taxid": 380911, "relation_to_type": "type", "validated": true, "ani": 79.4218, "matched_fragments": 425, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=CCUG 39790", "accession": "GCA_008801975.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 79.4131, "matched_fragments": 391, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=DSM 12141", "accession": "GCA_014203015.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 79.3769, "matched_fragments": 407, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parapusillimonas granuli", "strain": "strain=LMG 24012", "accession": "GCA_013416525.1", "taxid": 380911, "species_taxid": 380911, "relation_to_type": "type", "validated": true, "ani": 79.3416, "matched_fragments": 423, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2715, "matched_fragments": 394, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pertussis", "strain": "strain=FDAARGOS_1543", "accession": "GCA_020736265.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 79.2333, "matched_fragments": 394, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidimonas nitroreducens", "strain": "strain=SC-089", "accession": "GCA_002209565.1", "taxid": 683354, "species_taxid": 683354, "relation_to_type": "type", "validated": true, "ani": 79.2021, "matched_fragments": 405, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pertussis", "strain": "strain=18323", "accession": "GCA_000306945.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 79.1754, "matched_fragments": 383, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_1541", "accession": "GCA_020735925.1", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 79.165, "matched_fragments": 423, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=NCTC5952", "accession": "GCA_900445785.1", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1486, "matched_fragments": 415, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_177", "accession": "GCA_001525545.2", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1238, "matched_fragments": 418, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=NBRC 13691", "accession": "GCA_001598655.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0598, "matched_fragments": 405, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NBRC 15126", "accession": "GCA_001598595.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 79.0087, "matched_fragments": 464, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 78.9845, "matched_fragments": 475, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NCTC10807", "accession": "GCA_001457475.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 78.9722, "matched_fragments": 475, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidimonas humi", "strain": "strain=DSM 25336", "accession": "GCA_019166065.1", "taxid": 683355, "species_taxid": 683355, "relation_to_type": "type", "validated": true, "ani": 78.9524, "matched_fragments": 403, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insuavis", "strain": "strain=LMG 26845", "accession": "GCA_902859645.1", "taxid": 1287735, "species_taxid": 1287735, "relation_to_type": "type", "validated": true, "ani": 78.9119, "matched_fragments": 467, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter pulmonis", "strain": "strain=LMG 26696", "accession": "GCA_902859765.1", "taxid": 1389932, "species_taxid": 1389932, "relation_to_type": "type", "validated": true, "ani": 78.77, "matched_fragments": 440, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC 13520", "accession": "GCA_024168865.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 78.4929, "matched_fragments": 410, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 77.1646, "matched_fragments": 218, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium aquaticum", "strain": "strain=DSM 19852", "accession": "GCA_021129195.1", "taxid": 467180, "species_taxid": 467180, "relation_to_type": "type", "validated": true, "ani": 76.5144, "matched_fragments": 144, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004342005.1", "gtdb_species": "s__Paracandidimonas soli", "ani": 100.0, "matched_fragments": 1284, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paracandidimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.75", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014203015.1", "gtdb_species": "s__Castellaniella defragrans", "ani": 79.3582, "matched_fragments": 408, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Castellaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_013416525.1", "gtdb_species": "s__Parapusillimonas granuli", "ani": 79.3479, "matched_fragments": 422, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Parapusillimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002885955.2", "gtdb_species": "s__Achromobacter pulmonis_A", "ani": 79.3025, "matched_fragments": 473, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002209565.1", "gtdb_species": "s__Candidimonas nitroreducens", "ani": 79.2475, "matched_fragments": 401, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000306945.1", "gtdb_species": "s__Bordetella pertussis", "ani": 79.1615, "matched_fragments": 385, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "95.13", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.83", "num_clustered_genomes": 983, "status": "-" }, { "accession": "GCF_017356245.1", "gtdb_species": "s__Bordetella_A petrii_D", "ani": 79.1167, "matched_fragments": 427, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902859745.1", "gtdb_species": "s__Achromobacter dolens", "ani": 79.1035, "matched_fragments": 433, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0063, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_902859695.1", "gtdb_species": "s__Achromobacter ruhlandii", "ani": 79.0401, "matched_fragments": 463, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0063, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCF_016127315.1", "gtdb_species": "s__Achromobacter insuavis_A", "ani": 78.9823, "matched_fragments": 476, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.6014, "mean_intra_species_ani": "97.14", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_019166065.1", "gtdb_species": "s__Candidimonas humi", "ani": 78.9529, "matched_fragments": 403, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002261345.1", "gtdb_species": "s__Bordetella_A sp002261345", "ani": 78.9092, "matched_fragments": 458, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "99.26", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_902859645.1", "gtdb_species": "s__Achromobacter insuavis", "ani": 78.8793, "matched_fragments": 471, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.6014, "mean_intra_species_ani": "99.48", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002261225.1", "gtdb_species": "s__Bordetella_C sp002261225", "ani": 78.8535, "matched_fragments": 456, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002119665.1", "gtdb_species": "s__Bordetella_B sp002119665", "ani": 78.783, "matched_fragments": 438, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013416435.1", "gtdb_species": "s__Parapusillimonas sp013416435", "ani": 78.7798, "matched_fragments": 334, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Parapusillimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902859765.1", "gtdb_species": "s__Achromobacter pulmonis", "ani": 78.7518, "matched_fragments": 441, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.40", "min_intra_species_ani": "99.40", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900129885.1", "gtdb_species": "s__Candidimonas_A bauzanensis", "ani": 78.6215, "matched_fragments": 388, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003854895.1", "gtdb_species": "s__Pigmentiphaga sp003854895", "ani": 78.2948, "matched_fragments": 345, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pigmentiphaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002261215.1", "gtdb_species": "s__Bordetella_C sp002261215", "ani": 78.2414, "matched_fragments": 375, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008119665.1", "gtdb_species": "s__Pigmentiphaga aceris", "ani": 77.3478, "matched_fragments": 214, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pigmentiphaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }