{
    "type": "genome",
    "identifier": "GCF_004342165.1",
    "organism": "Natranaerovirga pectinivora",
    "title": "Natranaerovirga pectinivora",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004342165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10363399",
        "wgs_master": "SMAL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "682400",
        "species_taxid": "682400",
        "organism_name": "Natranaerovirga pectinivora",
        "infraspecific_name": "strain=DSM 24629",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/11",
        "asm_name": "ASM434216v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_004342165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/342/165/GCF_004342165.1_ASM434216v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3061098",
        "genome_size_ungapped": "3060905",
        "gc_percent": "31.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004342165.1-RS_2024_08_25",
        "annotation_date": "2024-08-25",
        "total_gene_count": "2929",
        "protein_coding_gene_count": "2848",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-11",
    "dateModified": "2019-03-11",
    "datePublished": "2019-03-11",
    "_annotation": {
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        "sample_organism": [
            "Natranaerovirga pectinivora"
        ],
        "sample_taxid": [
            "682400"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.844 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3061098",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "520913",
        "N50 (bp)": "236681",
        "Gap Ratio (%)": "0.006436",
        "GCcontent (%)": "31.3",
        "Number of CDSs": "2885",
        "Average Protein Length": "308.3",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Natranaerovirga pectinivora",
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                "relation_to_type": "type",
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            },
            {
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                "accession": "GCA_004339095.1",
                "taxid": 680378,
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Vallitalea guaymasensis",
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                "species_taxid": 1185412,
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                "matched_fragments": 100,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Crassaminicella profunda",
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                "accession": "GCA_019884785.1",
                "taxid": 1286698,
                "species_taxid": 1286698,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tepidibacter formicigenes",
                "strain": "strain=DSM 15518",
                "accession": "GCA_900142235.1",
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                "species_taxid": 227138,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium drakei",
                "strain": "strain=SL1",
                "accession": "GCA_003096175.1",
                "taxid": 332101,
                "species_taxid": 332101,
                "relation_to_type": "type",
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                "ani": 75.0442,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium scatologenes",
                "strain": "strain=ATCC 25775",
                "accession": "GCA_000968375.1",
                "taxid": 1548,
                "species_taxid": 1548,
                "relation_to_type": "type",
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                "ani": 75.0348,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium weizhouense",
                "strain": "strain=YB-6",
                "accession": "GCA_019431045.1",
                "taxid": 2859781,
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                "relation_to_type": "type",
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            }
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        "gtdb_result": [
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                "accession": "GCF_004342165.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__DSM-24629;g__Natranaerovirga",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018141425.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Vallitaleaceae;g__Vallitalea",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002841625.1",
                "gtdb_species": "s__HGW-1 sp002841625",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_002841375.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": null,
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        "genome_size": null,
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        "coding_genes": null,
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        "motility": null,
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        "facultative_respiration": null,
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        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
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        "pectinivora"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}