{ "type": "genome", "identifier": "GCF_004342245.1", "organism": "Gibbsiella quercinecans", "title": "Gibbsiella quercinecans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004342245.1", "bioproject": "PRJNA224116", "biosample": "SAMN10362886", "wgs_master": "SMBC00000000.1", "refseq_category": "na", "taxid": "929813", "species_taxid": "929813", "organism_name": "Gibbsiella quercinecans", "infraspecific_name": "strain=DSM 25889", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM434224v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004342245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/342/245/GCF_004342245.1_ASM434224v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5479391", "genome_size_ungapped": "5479295", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-01", "total_gene_count": "4987", "protein_coding_gene_count": "4799", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Gibbsiella quercinecans" ], "sample_taxid": [ "929813" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.548 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5479391", "Number of Sequences": "39", "Longest Sequences (bp)": "425886", "N50 (bp)": "241075", "Gap Ratio (%)": "0.001898", "GCcontent (%)": "56.0", "Number of CDSs": "4914", "Average Protein Length": "321.5", "Coding Ratio (%)": "86.5", "Number of rRNAs": "2", "Number of tRNAs": "74", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gibbsiella quercinecans", "strain": "strain=DSM 25889", "accession": "GCA_004342245.1", "taxid": 929813, "species_taxid": 929813, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1805, "total_fragments": 1807, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gibbsiella quercinecans", "strain": "strain=FRB97", "accession": "GCA_002291425.1", "taxid": 929813, "species_taxid": 929813, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 1807, "total_fragments": 1807, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gibbsiella quercinecans", "strain": "strain=FRB97", "accession": "GCA_003666185.1", "taxid": 929813, "species_taxid": 929813, "relation_to_type": "type", "validated": true, "ani": 99.9896, "matched_fragments": 1779, "total_fragments": 1807, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 82.5551, "matched_fragments": 931, "total_fragments": 1807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia surfactantfaciens", "strain": "strain=YD25", "accession": "GCA_001642805.2", "taxid": 2741499, "species_taxid": 2741499, "relation_to_type": "type", "validated": true, "ani": 82.4824, "matched_fragments": 886, "total_fragments": 1807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880", "accession": "GCA_017654245.1", "taxid": 615, "species_taxid": 615, "relation_to_type": "suspected-type", "validated": true, "ani": 82.4642, "matched_fragments": 916, "total_fragments": 1807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 82.4566, "matched_fragments": 924, "total_fragments": 1807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880 substr. 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