{ "type": "genome", "identifier": "GCF_004342665.1", "organism": "Samsonia erythrinae", "title": "Samsonia erythrinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004342665.1", "bioproject": "PRJNA224116", "biosample": "SAMN10362892", "wgs_master": "SMBY00000000.1", "refseq_category": "reference genome", "taxid": "160434", "species_taxid": "160434", "organism_name": "Samsonia erythrinae", "infraspecific_name": "strain=DSM 16730", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM434266v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004342665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/342/665/GCF_004342665.1_ASM434266v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3879021", "genome_size_ungapped": "3878924", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004342665.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3548", "protein_coding_gene_count": "3416", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Samsonia erythrinae" ], "sample_taxid": [ "160434" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.102 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3879021", "Number of Sequences": "31", "Longest Sequences (bp)": "984618", "N50 (bp)": "270423", "Gap Ratio (%)": "0.002836", "GCcontent (%)": "52.9", "Number of CDSs": "3444", "Average Protein Length": "320.6", "Coding Ratio (%)": "85.4", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pectobacterium carotovorum", "strain": "strain=DSM 30168", "accession": "GCA_900129615.1", "taxid": 554, "species_taxid": 554, "relation_to_type": "type", "validated": true, "ani": 85.3494, "matched_fragments": 1016, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium carotovorum subsp. carotovorum", "strain": "strain=NCPPB 312", "accession": "GCA_000749855.1", "taxid": 555, "species_taxid": 554, "relation_to_type": "suspected-type", "validated": true, "ani": 85.3475, "matched_fragments": 1008, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium carotovorum subsp. carotovorum", "strain": "strain=ICMP 5702", "accession": "GCA_001039055.1", "taxid": 555, "species_taxid": 554, "relation_to_type": "suspected-type", "validated": true, "ani": 85.2917, "matched_fragments": 1014, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium brasiliense", "strain": "strain=IPO:3540 CFBP:6617 ATCC:BAA-417 IBSBF:1692", "accession": "GCA_016950255.1", "taxid": 180957, "species_taxid": 180957, "relation_to_type": "type", "validated": true, "ani": 85.2267, "matched_fragments": 1036, 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"Pectobacterium quasiaquaticum", "strain": "strain=A477-S1-J17", "accession": "GCA_014946775.2", "taxid": 2774015, "species_taxid": 2774015, "relation_to_type": "type", "validated": true, "ani": 84.936, "matched_fragments": 979, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium atrosepticum", "strain": "strain=ICMP 1526", "accession": "GCA_001038685.1", "taxid": 29471, "species_taxid": 29471, "relation_to_type": "type", "validated": true, "ani": 84.5756, "matched_fragments": 973, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium atrosepticum", "strain": "strain=NCPPB 549", "accession": "GCA_000749905.1", "taxid": 29471, "species_taxid": 29471, "relation_to_type": "type", "validated": true, "ani": 84.5341, "matched_fragments": 1041, "total_fragments": 1277, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium polonicum", "strain": 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