{ "type": "genome", "identifier": "GCF_004343155.1", "organism": "Marichromatium gracile", "title": "Marichromatium gracile", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004343155.1", "bioproject": "PRJNA224116", "biosample": "SAMN10363319", "wgs_master": "SMDC00000000.1", "refseq_category": "reference genome", "taxid": "1048", "species_taxid": "1048", "organism_name": "Marichromatium gracile", "infraspecific_name": "strain=DSM 203", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM434315v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004343155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/343/155/GCF_004343155.1_ASM434315v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3830035", "genome_size_ungapped": "3829938", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004343155.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "3402", "protein_coding_gene_count": "3302", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Marichromatium gracile" ], "sample_taxid": [ "1048" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.032 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3830035", "Number of Sequences": "30", "Longest Sequences (bp)": "662200", "N50 (bp)": "284779", "Gap Ratio (%)": "0.002689", "GCcontent (%)": "68.4", "Number of CDSs": "3331", "Average Protein Length": "338.8", "Coding Ratio (%)": "88.4", "Number of rRNAs": "2", "Number of tRNAs": "62", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_004343155.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1262, "total_fragments": 1263, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_016583515.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 99.9458, "matched_fragments": 1214, "total_fragments": 1263, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marichromatium purpuratum", "strain": "strain=984", "accession": "GCA_000224005.3", "taxid": 37487, "species_taxid": 37487, "relation_to_type": "type", "validated": true, "ani": 94.9523, "matched_fragments": 1141, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium bheemlicum", "strain": "strain=DSM 18632", "accession": "GCA_012276755.1", "taxid": 365339, "species_taxid": 365339, "relation_to_type": "type", "validated": true, "ani": 91.272, "matched_fragments": 1060, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium 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"GCA_010820565.1", "taxid": 57489, "species_taxid": 57489, "relation_to_type": "type", "validated": true, "ani": 79.3902, "matched_fragments": 558, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa bogorovii", "strain": "strain=BBS", "accession": "GCA_021228795.1", "taxid": 521689, "species_taxid": 521689, "relation_to_type": "type", "validated": true, "ani": 78.8019, "matched_fragments": 450, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 77.0217, "matched_fragments": 282, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, 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