{ "type": "genome", "identifier": "GCF_004345705.1", "organism": "Marinisporobacter balticus", "title": "Marinisporobacter balticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004345705.1", "bioproject": "PRJNA224116", "biosample": "SAMN10864736", "wgs_master": "SLWV00000000.1", "refseq_category": "reference genome", "taxid": "2018667", "species_taxid": "2018667", "organism_name": "Marinisporobacter balticus", "infraspecific_name": "strain=DSM 102940", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM434570v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004345705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/345/705/GCF_004345705.1_ASM434570v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3865388", "genome_size_ungapped": "3865388", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004345705.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3783", "protein_coding_gene_count": "3654", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinisporobacter balticus" ], "sample_taxid": [ "2018667" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.074 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3865388", "Number of Sequences": "74", "Longest Sequences (bp)": "323361", "N50 (bp)": "108044", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.4", "Number of CDSs": "3724", "Average Protein Length": "295.3", "Coding Ratio (%)": "85.4", "Number of rRNAs": "4", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Crassaminicella profunda", "strain": "strain=Ra1766H", "accession": "GCA_019884785.1", "taxid": 1286698, "species_taxid": 1286698, "relation_to_type": "type", "validated": true, "ani": 79.8615, "matched_fragments": 623, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crassaminicella thermophila", "strain": "strain=SY095", "accession": "GCA_008152325.1", "taxid": 2599308, "species_taxid": 2599308, "relation_to_type": "type", "validated": true, "ani": 79.1759, "matched_fragments": 482, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerosolibacter carboniphilus", "strain": "strain=DSM 103526", "accession": "GCA_014205875.1", "taxid": 1417629, "species_taxid": 1417629, "relation_to_type": "type", "validated": true, "ani": 77.0747, "matched_fragments": 99, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromicrobium sediminis", "strain": "strain=DY2726D", "accession": "GCA_002270055.1", "taxid": 1478221, "species_taxid": 1478221, "relation_to_type": "type", "validated": true, "ani": 76.9758, "matched_fragments": 171, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geosporobacter ferrireducens", "strain": "strain=IRF9", "accession": "GCA_001750685.1", "taxid": 1424294, "species_taxid": 1424294, "relation_to_type": "type", "validated": true, "ani": 76.6887, "matched_fragments": 101, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maledivibacter halophilus", "strain": "strain=M1", "accession": "GCA_900167445.1", "taxid": 36842, "species_taxid": 36842, "relation_to_type": "type", "validated": true, "ani": 76.1593, "matched_fragments": 101, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium sporogenes", "strain": "strain=DSM 795", "accession": "GCA_001020205.1", "taxid": 1509, "species_taxid": 1509, "relation_to_type": "type", "validated": true, "ani": 75.702, "matched_fragments": 76, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium sporogenes", "strain": "strain=NCTC13020", "accession": "GCA_900461305.1", "taxid": 1509, "species_taxid": 1509, "relation_to_type": "type", "validated": true, "ani": 75.6737, "matched_fragments": 74, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Romboutsia hominis", "strain": "strain=FRIFI", "accession": "GCA_900002575.1", "taxid": 1507512, "species_taxid": 1507512, "relation_to_type": "type", "validated": true, "ani": 75.5614, "matched_fragments": 57, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraclostridium benzoelyticum", "strain": "strain=JC272", "accession": "GCA_001006285.1", "taxid": 1629550, "species_taxid": 1629550, "relation_to_type": "type", "validated": true, "ani": 75.3785, "matched_fragments": 51, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium beijerinckii", "strain": "strain=DSM 791", "accession": "GCA_018223745.1", "taxid": 1520, "species_taxid": 1520, "relation_to_type": "suspected-type", "validated": true, "ani": 75.161, "matched_fragments": 65, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] dakarense", "strain": "strain=FF1", "accession": "GCA_000499525.1", "taxid": 1301100, "species_taxid": 1301100, "relation_to_type": "type", "validated": true, "ani": 75.0421, "matched_fragments": 60, "total_fragments": 1252, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004345705.1", "gtdb_species": "s__Marinisporobacter balticus", "ani": 100.0, "matched_fragments": 1250, "total_fragments": 1252, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Thermotaleaceae;g__Marinisporobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_019203185.1", "gtdb_species": "s__143-21 sp019203185", "ani": 79.2475, "matched_fragments": 453, "total_fragments": 1252, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Thermotaleaceae;g__143-21", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008152325.1", "gtdb_species": "s__SY095 sp008152325", "ani": 79.1905, "matched_fragments": 481, "total_fragments": 1252, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Thermotaleaceae;g__SY095", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004138215.1", "gtdb_species": "s__Inediibacterium nitritogenes", "ani": 77.7784, "matched_fragments": 311, "total_fragments": 1252, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Thermotaleaceae;g__Inediibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015686845.1", "gtdb_species": "s__JADPRS01 sp015686845", "ani": 77.7329, "matched_fragments": 261, "total_fragments": 1252, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Thermotaleaceae;g__JADPRS01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001282725.1", "gtdb_species": "s__Inediibacterium massiliense", "ani": 77.728, "matched_fragments": 340, "total_fragments": 1252, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Thermotaleaceae;g__Inediibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001750685.1", "gtdb_species": "s__Geosporobacter ferrireducens", "ani": 76.5718, "matched_fragments": 101, "total_fragments": 1252, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Thermotaleaceae;g__Geosporobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "99.59", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Marinisporobacter", "balticus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }