{ "type": "genome", "identifier": "GCF_004346845.1", "organism": "Winogradskyella wandonensis", "title": "Winogradskyella wandonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004346845.1", "bioproject": "PRJNA224116", "biosample": "SAMN09075499", "wgs_master": "SMGI00000000.1", "refseq_category": "reference genome", "taxid": "1442586", "species_taxid": "1442586", "organism_name": "Winogradskyella wandonensis", "infraspecific_name": "strain=CECT 8445", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM434684v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004346845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/346/845/GCF_004346845.1_ASM434684v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2958316", "genome_size_ungapped": "2958026", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004346845.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "2729", "protein_coding_gene_count": "2678", "non_coding_gene_count": "43", "pubmed_id": "26203337" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella wandonensis" ], "sample_taxid": [ "1442586" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.831 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2958316", "Number of Sequences": "13", "Longest Sequences (bp)": "1050617", "N50 (bp)": "989221", "Gap Ratio (%)": "0.009803", "GCcontent (%)": "34.8", "Number of CDSs": "2673", "Average Protein Length": "336.4", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella wandonensis", "strain": "strain=CECT 8445", "accession": "GCA_004346845.1", "taxid": 1442586, "species_taxid": 1442586, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 77.9326, "matched_fragments": 350, "total_fragments": 978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 77.9257, "matched_fragments": 350, "total_fragments": 978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella thalassocola", "strain": "strain=DSM 15363", "accession": "GCA_900099995.1", "taxid": 262004, "species_taxid": 262004, "relation_to_type": "type", "validated": true, "ani": 77.8695, "matched_fragments": 295, "total_fragments": 978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella algicola", "strain": "strain=IMCC33238", "accession": "GCA_005869935.1", "taxid": 2575815, "species_taxid": 2575815, "relation_to_type": "type", "validated": true, "ani": 77.8502, "matched_fragments": 317, "total_fragments": 978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella marina", "strain": "strain=F6397", "accession": "GCA_015645385.1", "taxid": 2785530, "species_taxid": 2785530, "relation_to_type": "type", "validated": true, "ani": 77.8368, "matched_fragments": 293, "total_fragments": 978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 77.8189, "matched_fragments": 285, "total_fragments": 978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.248, "matched_fragments": 230, "total_fragments": 978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix himadriensis", "strain": "strain=E4-9a", "accession": "GCA_001418105.1", "taxid": 641549, "species_taxid": 641549, "relation_to_type": "type", "validated": true, "ani": 77.2273, "matched_fragments": 195, "total_fragments": 978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 77.2146, "matched_fragments": 152, "total_fragments": 978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", 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