{ "type": "genome", "identifier": "GCF_004346865.1", "organism": "Shimia isoporae", "title": "Shimia isoporae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004346865.1", "bioproject": "PRJNA224116", "biosample": "SAMN06264852", "wgs_master": "SMGR00000000.1", "refseq_category": "reference genome", "taxid": "647720", "species_taxid": "647720", "organism_name": "Shimia isoporae", "infraspecific_name": "strain=DSM 26433", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/11", "asm_name": "ASM434686v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_004346865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/346/865/GCF_004346865.1_ASM434686v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4232765", "genome_size_ungapped": "4232765", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004346865.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "4100", "protein_coding_gene_count": "4040", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-11", "dateModified": "2019-03-11", "datePublished": "2019-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Shimia isoporae" ], "sample_taxid": [ "647720" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], 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"conclusive" }, { "organism_name": "Shimia haliotis", "strain": "strain=DSM 28453", "accession": "GCA_900114415.1", "taxid": 1280847, "species_taxid": 1280847, "relation_to_type": "type", "validated": true, "ani": 80.7971, "matched_fragments": 758, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia marina", "strain": "strain=DSM 26895", "accession": "GCA_900112745.1", "taxid": 321267, "species_taxid": 321267, "relation_to_type": "type", "validated": true, "ani": 78.7306, "matched_fragments": 358, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia marina", "strain": "strain=CECT 7688", "accession": "GCA_001458175.1", "taxid": 321267, "species_taxid": 321267, "relation_to_type": "type", "validated": true, "ani": 78.7047, "matched_fragments": 359, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mediterraneus", "strain": 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"taxid": 1280832, "species_taxid": 1280832, "relation_to_type": "type", "validated": true, "ani": 77.3137, "matched_fragments": 232, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia gijangensis", "strain": "strain=DSM 100564", "accession": "GCA_900142085.1", "taxid": 1470563, "species_taxid": 1470563, "relation_to_type": "type", "validated": true, "ani": 77.2614, "matched_fragments": 225, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognatishimia maritima", "strain": "strain=DSM 28223", "accession": "GCA_900129685.1", "taxid": 870908, "species_taxid": 870908, "relation_to_type": "type", "validated": true, "ani": 77.2088, "matched_fragments": 192, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, 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