{ "type": "genome", "identifier": "GCF_004347775.1", "organism": "Pseudocnuella soli", "title": "Pseudocnuella soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004347775.1", "bioproject": "PRJNA224116", "biosample": "SAMN10715998", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2502779", "species_taxid": "2502779", "organism_name": "Pseudocnuella soli", "infraspecific_name": "strain=17J28-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/13", "asm_name": "ASM434777v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_004347775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/347/775/GCF_004347775.1_ASM434777v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4804510", "genome_size_ungapped": "4804510", "gc_percent": "49.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004347775.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4008", "protein_coding_gene_count": "3938", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-13", "dateModified": "2019-03-13", "datePublished": "2019-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudocnuella soli" ], "sample_taxid": [ "2502779" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seoul" ], "sample_host_location_id": [], "data_size": "1.352 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4804510", "Number of Sequences": "1", "Longest Sequences (bp)": "4804510", "N50 (bp)": "4804510", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.4", "Number of CDSs": "3904", "Average Protein Length": "348.3", "Coding Ratio (%)": "84.9", "Number of rRNAs": "9", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cnuella takakiae", "strain": "strain=RG1-1", "accession": "GCA_001953305.1", "taxid": 1302690, "species_taxid": 1302690, "relation_to_type": "type", "validated": true, "ani": 78.2765, "matched_fragments": 568, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cnuella takakiae", "strain": "strain=DSM 26897", "accession": "GCA_900129015.1", "taxid": 1302690, "species_taxid": 1302690, "relation_to_type": "type", "validated": true, "ani": 78.1863, "matched_fragments": 578, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter stibioxidans", "strain": "strain=YS-17", "accession": "GCA_014332695.1", "taxid": 1834163, "species_taxid": 1834163, "relation_to_type": "type", "validated": true, "ani": 77.067, "matched_fragments": 87, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phnomibacter ginsenosidimutans", "strain": "strain=SB-02", "accession": "GCA_009740285.1", "taxid": 2676868, "species_taxid": 2676868, "relation_to_type": "type", "validated": true, "ani": 76.8914, "matched_fragments": 137, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain=Gsoil 636", "accession": "GCA_007970805.1", "taxid": 661481, "species_taxid": 661481, "relation_to_type": "type", "validated": true, "ani": 76.6015, "matched_fragments": 187, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flaviaesturariibacter aridisoli", "strain": "strain=17J68-15", "accession": "GCA_004343705.1", "taxid": 2545761, "species_taxid": 2545761, "relation_to_type": "type", "validated": true, "ani": 76.4794, "matched_fragments": 176, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pinibacter aurantiacus", "strain": "strain=MAH-26", "accession": "GCA_019130065.1", "taxid": 2851599, "species_taxid": 2851599, "relation_to_type": "type", "validated": true, "ani": 76.4324, "matched_fragments": 61, "total_fragments": 1601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": 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