{ "type": "genome", "identifier": "GCF_004348335.1", "organism": "Actinomadura bangladeshensis", "title": "Actinomadura bangladeshensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ondokuz Mayis University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004348335.1", "bioproject": "PRJNA224116", "biosample": "SAMN11032588", "wgs_master": "SMJW00000000.1", "refseq_category": "na", "taxid": "453573", "species_taxid": "453573", "organism_name": "Actinomadura bangladeshensis", "infraspecific_name": "strain=DSM 45347", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/13", "asm_name": "ASM434833v1", "asm_submitter": "Ondokuz Mayis University", "gbrs_paired_asm": "GCA_004348335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/348/335/GCF_004348335.1_ASM434833v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8697534", "genome_size_ungapped": "8697534", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "610", "contig_count": "610", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004348335.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "8351", "protein_coding_gene_count": "8096", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-13", "dateModified": "2019-03-13", "datePublished": "2019-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura bangladeshensis" ], "sample_taxid": [ "453573" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Bangladesh: Chokoria" ], "sample_host_location_id": [], "data_size": "2.351 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8697534", "Number of Sequences": "610", "Longest Sequences (bp)": "142838", "N50 (bp)": "27024", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "7818", "Average Protein Length": "312.7", "Coding Ratio (%)": "84.3", "Number of rRNAs": "7", "Number of tRNAs": "77", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura bangladeshensis", "strain": "strain=DSM 45347", "accession": "GCA_004348335.1", "taxid": 453573, "species_taxid": 453573, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2568, "total_fragments": 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{ "organism_name": "Actinomadura meyerae", "strain": "strain=DSM 44715", "accession": "GCA_900188445.1", "taxid": 240840, "species_taxid": 240840, "relation_to_type": "type", "validated": true, "ani": 89.3324, "matched_fragments": 1894, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura formosensis", "strain": "strain=NBRC 14204", "accession": "GCA_001552155.1", "taxid": 60706, "species_taxid": 60706, "relation_to_type": "type", "validated": true, "ani": 88.3275, "matched_fragments": 1507, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura madurae", "strain": "strain=DSM 43067", "accession": "GCA_900115095.1", "taxid": 1993, "species_taxid": 1993, "relation_to_type": "type", "validated": true, "ani": 87.2193, "matched_fragments": 1869, "total_fragments": 2595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura mexicana", "strain": 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"mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.301, "cell_length": null, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 32.909, "optimum_ph": 7.142, "genome_size": 8227448.539, "gc_content": 72.459, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.333, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinomadura", "bangladeshensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }