{ "type": "genome", "identifier": "GCF_004348345.1", "organism": "Nonomuraea longispora", "title": "Nonomuraea longispora", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ondokuz Mayis University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004348345.1", "bioproject": "PRJNA224116", "biosample": "SAMN11032585", "wgs_master": "SMJZ00000000.1", "refseq_category": "reference genome", "taxid": "1848320", "species_taxid": "1848320", "organism_name": "Nonomuraea longispora", "infraspecific_name": "strain=KC201", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/13", "asm_name": "ASM434834v1", "asm_submitter": "Ondokuz Mayis University", "gbrs_paired_asm": "GCA_004348345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/348/345/GCF_004348345.1_ASM434834v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9164341", "genome_size_ungapped": "9164341", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "465", "contig_count": "465", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004348345.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "8893", "protein_coding_gene_count": "8599", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-13", "dateModified": "2019-03-13", "datePublished": "2019-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea longispora" ], "sample_taxid": [ "1848320" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkmenistan: Darvaz" ], "sample_host_location_id": [], "data_size": "2.499 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9164341", "Number of Sequences": "465", "Longest Sequences (bp)": "140806", "N50 (bp)": "34207", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "8477", "Average Protein Length": "306.2", "Coding Ratio (%)": "85.0", "Number of rRNAs": "3", "Number of tRNAs": "81", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea longispora", "strain": "strain=KC201", "accession": "GCA_004348345.1", "taxid": 1848320, "species_taxid": 1848320, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2795, "total_fragments": 2827, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nonomuraea mesophila", "strain": "strain=6K102", "accession": "GCA_004352805.1", "taxid": 2530382, "species_taxid": 2530382, "relation_to_type": "type", "validated": true, "ani": 95.0366, "matched_fragments": 2452, "total_fragments": 2827, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nonomuraea deserti", "strain": "strain=KC310", "accession": "GCA_004348685.1", "taxid": 1848322, "species_taxid": 1848322, "relation_to_type": "type", "validated": true, "ani": 92.3604, "matched_fragments": 2277, "total_fragments": 2827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea diastatica", "strain": "strain=KC712", "accession": "GCA_004349015.1", "taxid": 1848329, "species_taxid": 1848329, "relation_to_type": "type", "validated": true, "ani": 92.0763, "matched_fragments": 2289, "total_fragments": 2827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea 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"GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 85.4991, "matched_fragments": 1963, "total_fragments": 2827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea fuscirosea", "strain": "strain=CGMCC 4.7104", "accession": "GCA_003001935.1", "taxid": 1291556, "species_taxid": 1291556, "relation_to_type": "type", "validated": true, "ani": 85.4361, "matched_fragments": 2016, "total_fragments": 2827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 85.3448, "matched_fragments": 1871, "total_fragments": 2827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aridisoli", "strain": "strain=KC333", "accession": "GCA_003236395.1", "taxid": 2070368, "species_taxid": 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