{ "type": "genome", "identifier": "GCF_004348455.1", "organism": "Kribbella albertanoniae", "title": "Kribbella albertanoniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ondokuz Mayis University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004348455.1", "bioproject": "PRJNA224116", "biosample": "SAMN11032584", "wgs_master": "SMKA00000000.1", "refseq_category": "reference genome", "taxid": "1266829", "species_taxid": "1266829", "organism_name": "Kribbella albertanoniae", "infraspecific_name": "strain=JCM 30547", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/13", "asm_name": "ASM434845v1", "asm_submitter": "Ondokuz Mayis University", "gbrs_paired_asm": "GCA_004348455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/348/455/GCF_004348455.1_ASM434845v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9727339", "genome_size_ungapped": "9727339", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "593", "contig_count": "593", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004348455.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "9086", "protein_coding_gene_count": "8934", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-13", "dateModified": "2019-03-13", "datePublished": "2019-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Kribbella albertanoniae" ], "sample_taxid": [ "1266829" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Rome" ], "sample_host_location_id": [], "data_size": "2.682 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9727339", "Number of Sequences": "593", "Longest Sequences (bp)": "203280", "N50 (bp)": "26656", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "8696", "Average Protein Length": "323.5", "Coding Ratio (%)": "86.8", "Number of rRNAs": "4", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kribbella antibiotica", "strain": "strain=JCM 13523", "accession": "GCA_004349055.1", "taxid": 190195, "species_taxid": 190195, "relation_to_type": "type", "validated": true, "ani": 87.477, "matched_fragments": 2061, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sandramycini", "strain": "strain=ATCC 39419", "accession": "GCA_013131805.1", "taxid": 60450, "species_taxid": 60450, "relation_to_type": "type", "validated": true, "ani": 85.0946, "matched_fragments": 1869, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sandramycini", "strain": "strain=DSM 15626", "accession": "GCA_014207795.1", "taxid": 60450, "species_taxid": 60450, "relation_to_type": "type", "validated": true, "ani": 85.0768, "matched_fragments": 1890, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 83.3118, "matched_fragments": 1419, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella pittospori", "strain": "strain=NRRL B-24813", "accession": "GCA_004331465.1", "taxid": 722689, "species_taxid": 722689, "relation_to_type": "type", "validated": true, "ani": 83.2718, "matched_fragments": 1620, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 83.2486, "matched_fragments": 1614, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella aluminosa", "strain": "strain=DSM 18824", "accession": "GCA_017876295.1", "taxid": 416017, "species_taxid": 416017, "relation_to_type": "type", "validated": true, "ani": 83.1205, "matched_fragments": 1587, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sindirgiensis", "strain": "strain=DSM 27082", "accession": "GCA_004331435.1", "taxid": 1124744, "species_taxid": 1124744, "relation_to_type": "type", "validated": true, "ani": 83.0777, "matched_fragments": 1674, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 83.0286, "matched_fragments": 1708, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella shirazensis", "strain": "strain=DSM 45490", "accession": "GCA_011761605.1", "taxid": 1105143, "species_taxid": 1105143, "relation_to_type": "type", "validated": true, "ani": 83.0224, "matched_fragments": 1597, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 82.954, "matched_fragments": 1582, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jejuensis", "strain": "strain=DSM 17305", "accession": "GCA_006715085.1", "taxid": 236068, "species_taxid": 236068, "relation_to_type": "type", "validated": true, "ani": 82.7504, "matched_fragments": 1503, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella italica", "strain": "strain=DSM 28967", "accession": "GCA_014205135.1", "taxid": 1540520, "species_taxid": 1540520, "relation_to_type": "type", "validated": true, "ani": 82.5801, "matched_fragments": 1560, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella catacumbae", "strain": "strain=DSM 19601", "accession": "GCA_000372465.1", "taxid": 460086, "species_taxid": 460086, "relation_to_type": "type", "validated": true, "ani": 82.5644, "matched_fragments": 1617, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella flavida", "strain": "strain=DSM 17836", "accession": "GCA_000024345.1", "taxid": 182640, "species_taxid": 182640, "relation_to_type": "type", "validated": true, "ani": 82.2266, "matched_fragments": 1423, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.6902, "matched_fragments": 477, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004348455.1", "gtdb_species": "s__Kribbella albertanoniae", "ani": 100.0, "matched_fragments": 2932, "total_fragments": 2959, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004349055.1", "gtdb_species": "s__Kribbella antibiotica", "ani": 87.4959, "matched_fragments": 2058, "total_fragments": 2959, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013131805.1", "gtdb_species": "s__Kribbella sandramycini", "ani": 85.0901, "matched_fragments": 1870, "total_fragments": 2959, 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