{ "type": "genome", "identifier": "GCF_004348895.1", "organism": "Pseudomonas vancouverensis", "title": "Pseudomonas vancouverensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of British Columbia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004348895.1", "bioproject": "PRJNA224116", "biosample": "SAMN10506519", "wgs_master": "RRZK00000000.1", "refseq_category": "na", "taxid": "95300", "species_taxid": "95300", "organism_name": "Pseudomonas vancouverensis", "infraspecific_name": "strain=Dha-51", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/13", "asm_name": "ASM434889v1", "asm_submitter": "University of British Columbia", "gbrs_paired_asm": "GCA_004348895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/348/895/GCF_004348895.1_ASM434889v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6385632", "genome_size_ungapped": "6385632", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004348895.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "5892", "protein_coding_gene_count": "5787", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-13", "dateModified": "2019-03-13", "datePublished": "2019-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas vancouverensis" ], "sample_taxid": [ "95300" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: University of British Columbia Endowment Lands, Vancouver, BC" ], "sample_host_location_id": [], "data_size": "1.790 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6385632", "Number of Sequences": "40", "Longest Sequences (bp)": "692815", "N50 (bp)": "301143", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.1", "Number of CDSs": "5804", "Average Protein Length": "324.9", "Coding Ratio (%)": "88.6", "Number of rRNAs": "2", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas vancouverensis", "strain": "strain=Dha-51", "accession": "GCA_004348895.1", "taxid": 95300, "species_taxid": 95300, "relation_to_type": "type", "validated": true, "ani": 100.0, 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2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoriens", "strain": "strain=SWRI123", "accession": "GCA_019139795.1", "taxid": 2842350, "species_taxid": 2842350, "relation_to_type": "type", "validated": true, "ani": 87.7434, "matched_fragments": 1539, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas laurylsulfativorans", "strain": "strain=AP3_22", "accession": "GCA_002906155.1", "taxid": 1943631, "species_taxid": 1943631, "relation_to_type": "type", "validated": true, "ani": 87.6976, "matched_fragments": 1599, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas izuensis", "strain": "strain=IzPS43_3003", "accession": "GCA_009861505.1", "taxid": 2684212, "species_taxid": 2684212, "relation_to_type": "type", "validated": true, "ani": 86.6448, "matched_fragments": 1529, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=MT1", "accession": "GCA_001945365.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 86.5533, "matched_fragments": 1449, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=CCUG 53116", "accession": "GCA_008801455.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 86.5316, "matched_fragments": 1448, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 86.0292, "matched_fragments": 1347, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 85.9641, "matched_fragments": 1423, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas neuropathica", "strain": "strain=P155", "accession": "GCA_015461835.1", "taxid": 2730425, "species_taxid": 2730425, "relation_to_type": "type", "validated": true, "ani": 85.2757, "matched_fragments": 1401, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tensinigenes", "strain": "strain=ZA 5.3", "accession": "GCA_014268445.2", "taxid": 2745511, "species_taxid": 2745511, "relation_to_type": "type", "validated": true, "ani": 85.2123, "matched_fragments": 1405, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": 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2745514, "relation_to_type": "type", "validated": true, "ani": 83.2137, "matched_fragments": 1165, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lactis", "strain": "strain=DSM 29167", "accession": "GCA_001439845.1", "taxid": 1615674, "species_taxid": 1615674, "relation_to_type": "type", "validated": true, "ani": 83.1808, "matched_fragments": 1148, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fuscovaginae", "strain": "strain=LMG 2158", "accession": "GCA_900108595.1", "taxid": 50340, "species_taxid": 50340, "relation_to_type": "suspected-type", "validated": true, "ani": 82.976, "matched_fragments": 1094, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicae", "strain": "strain=MAFF 212427", "accession": "GCA_010671725.1", "taxid": 2708063, "species_taxid": 2708063, "relation_to_type": "type", 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