{ "type": "genome", "identifier": "GCF_004349085.1", "organism": "Flavobacterium caseinilyticum", "title": "Flavobacterium caseinilyticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyonggi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004349085.1", "bioproject": "PRJNA224116", "biosample": "SAMN11039071", "wgs_master": "SMFM00000000.1", "refseq_category": "reference genome", "taxid": "2541732", "species_taxid": "2541732", "organism_name": "Flavobacterium caseinilyticum", "infraspecific_name": "strain=AT-3-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/13", "asm_name": "ASM434908v1", "asm_submitter": "Kyonggi University", "gbrs_paired_asm": "GCA_004349085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/349/085/GCF_004349085.1_ASM434908v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3838245", "genome_size_ungapped": "3838245", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004349085.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3442", "protein_coding_gene_count": "3353", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-13", "dateModified": "2019-03-13", "datePublished": "2019-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium caseinilyticum" ], "sample_taxid": [ "2541732" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Svalbard: Jan Mayen" ], "sample_host_location_id": [], "data_size": "1.071 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3838245", "Number of Sequences": "28", "Longest Sequences (bp)": "1007852", "N50 (bp)": "288268", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.8", "Number of CDSs": "3329", "Average Protein Length": "327.8", "Coding Ratio (%)": "85.3", "Number of rRNAs": "4", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium caseinilyticum", "strain": "strain=AT-3-2", "accession": "GCA_004349085.1", "taxid": 2541732, "species_taxid": 2541732, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1261, "total_fragments": 1263, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 87.6645, "matched_fragments": 876, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 87.1945, "matched_fragments": 828, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limicola", "strain": "strain=DSM 15094", "accession": "GCA_003634755.1", "taxid": 180441, "species_taxid": 180441, "relation_to_type": "type", "validated": true, "ani": 86.6248, "matched_fragments": 764, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 86.5865, "matched_fragments": 796, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 86.2117, "matched_fragments": 801, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 85.309, "matched_fragments": 756, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=CGMCC 1.5380", "accession": "GCA_007994155.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 85.2565, "matched_fragments": 760, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 84.8826, "matched_fragments": 754, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ranwuense", "strain": "strain=LB2P22", "accession": "GCA_004349315.1", "taxid": 2541725, "species_taxid": 2541725, "relation_to_type": "type", "validated": true, "ani": 84.5878, "matched_fragments": 794, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 82.5821, "matched_fragments": 699, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium urumqiense", "strain": "strain=CGMCC 1.9230", "accession": "GCA_900108015.1", "taxid": 935224, "species_taxid": 935224, "relation_to_type": "type", "validated": true, "ani": 82.3185, "matched_fragments": 696, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xinjiangense", "strain": "strain=CGMCC 1.2749", "accession": "GCA_900142885.1", "taxid": 178356, "species_taxid": 178356, "relation_to_type": "type", "validated": true, "ani": 82.1425, "matched_fragments": 707, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", 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