{ "type": "genome", "identifier": "GCF_004349135.1", "organism": "Flavobacterium sandaracinum", "title": "Flavobacterium sandaracinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyonggi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004349135.1", "bioproject": "PRJNA224116", "biosample": "SAMN11039072", "wgs_master": "SMFN00000000.1", "refseq_category": "reference genome", "taxid": "2541733", "species_taxid": "2541733", "organism_name": "Flavobacterium sandaracinum", "infraspecific_name": "strain=LB-D12", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/13", "asm_name": "ASM434913v1", "asm_submitter": "Kyonggi University", "gbrs_paired_asm": "GCA_004349135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/349/135/GCF_004349135.1_ASM434913v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4029235", "genome_size_ungapped": "4029235", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "65", "contig_count": "65", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004349135.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "3537", "protein_coding_gene_count": "3438", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-13", "dateModified": "2019-03-13", "datePublished": "2019-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium sandaracinum" ], "sample_taxid": [ "2541733" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Svalbard: Jan Mayen" ], "sample_host_location_id": [], "data_size": "1.128 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4029235", "Number of Sequences": "65", "Longest Sequences (bp)": "436959", "N50 (bp)": "161475", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.4", "Number of CDSs": "3413", "Average Protein Length": "334.4", "Coding Ratio (%)": "85.0", "Number of rRNAs": "5", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium sandaracinum", "strain": "strain=LB-D12", "accession": "GCA_004349135.1", "taxid": 2541733, "species_taxid": 2541733, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1306, "total_fragments": 1307, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium xanthum", "strain": "strain=DSM 3661", "accession": "GCA_900142695.1", "taxid": 69322, "species_taxid": 69322, "relation_to_type": "type", "validated": true, "ani": 91.5924, "matched_fragments": 983, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium omnivorum", "strain": "strain=CGMCC 1.2747", "accession": "GCA_900099915.1", "taxid": 178355, "species_taxid": 178355, "relation_to_type": "type", "validated": true, "ani": 90.1706, "matched_fragments": 971, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fryxellicola", "strain": "strain=DSM 16209", "accession": "GCA_001637185.1", "taxid": 249352, "species_taxid": 249352, "relation_to_type": "type", "validated": true, "ani": 87.6309, "matched_fragments": 942, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fryxellicola", "strain": "strain=DSM 16209", "accession": "GCA_900143245.1", "taxid": 249352, "species_taxid": 249352, "relation_to_type": "type", "validated": true, "ani": 87.6068, "matched_fragments": 943, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 86.4889, "matched_fragments": 903, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 85.9746, "matched_fragments": 870, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 85.6772, "matched_fragments": 812, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ranwuense", "strain": "strain=LB2P22", "accession": "GCA_004349315.1", "taxid": 2541725, "species_taxid": 2541725, "relation_to_type": "type", "validated": true, "ani": 83.8546, "matched_fragments": 807, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 83.8155, "matched_fragments": 783, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 81.997, "matched_fragments": 695, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 79.3048, "matched_fragments": 485, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.4513, "matched_fragments": 375, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 78.3218, "matched_fragments": 349, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.2998, "matched_fragments": 352, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alkalisoli", "strain": "strain=XS-5", "accession": "GCA_008000935.1", "taxid": 2602769, "species_taxid": 2602769, "relation_to_type": "type", "validated": true, "ani": 76.9391, "matched_fragments": 79, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004349135.1", "gtdb_species": 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