{ "type": "genome", "identifier": "GCF_004349225.1", "organism": "Saccharopolyspora karakumensis", "title": "Saccharopolyspora karakumensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ondokuz Mayis University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004349225.1", "bioproject": "PRJNA224116", "biosample": "SAMN11032558", "wgs_master": "SMLA00000000.1", "refseq_category": "reference genome", "taxid": "2530386", "species_taxid": "2530386", "organism_name": "Saccharopolyspora karakumensis", "infraspecific_name": "strain=5K548", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/13", "asm_name": "ASM434922v1", "asm_submitter": "Ondokuz Mayis University", "gbrs_paired_asm": "GCA_004349225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/349/225/GCF_004349225.1_ASM434922v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6670713", "genome_size_ungapped": "6670713", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "137", "contig_count": "137", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004349225.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "6319", "protein_coding_gene_count": "6158", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-13", "dateModified": "2019-03-13", "datePublished": "2019-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharopolyspora karakumensis" ], "sample_taxid": [ "2530386" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkmenistan: Mary" ], "sample_host_location_id": [], "data_size": "1.808 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6670713", "Number of Sequences": "137", "Longest Sequences (bp)": "265907", "N50 (bp)": "92552", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "6204", "Average Protein Length": "312.0", "Coding Ratio (%)": "87.1", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharopolyspora karakumensis", "strain": "strain=5K548", "accession": "GCA_004349225.1", "taxid": 2530386, "species_taxid": 2530386, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2145, "total_fragments": 2152, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Saccharopolyspora endophytica", "strain": "strain=KCTC 19397", "accession": "GCA_018070075.1", "taxid": 543886, "species_taxid": 543886, "relation_to_type": "type", "validated": true, "ani": 95.9471, "matched_fragments": 1872, "total_fragments": 2152, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Saccharopolyspora terrae", "strain": "strain=16K309", "accession": "GCA_004348435.1", "taxid": 2530384, "species_taxid": 2530384, "relation_to_type": "type", "validated": true, "ani": 95.709, "matched_fragments": 1823, "total_fragments": 2152, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Saccharopolyspora aridisoli", "strain": "strain=16K404", "accession": "GCA_004348445.1", "taxid": 2530385, "species_taxid": 2530385, "relation_to_type": "type", "validated": true, "ani": 94.1577, "matched_fragments": 1672, "total_fragments": 2152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora dendranthemae", "strain": "strain=DSM 46699", "accession": "GCA_007829955.1", "taxid": 1181886, "species_taxid": 1181886, "relation_to_type": "type", "validated": true, "ani": 89.4858, "matched_fragments": 1642, "total_fragments": 2152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora flava", "strain": "strain=DSM 44771", "accession": "GCA_900116135.1", "taxid": 95161, "species_taxid": 95161, "relation_to_type": "type", "validated": true, "ani": 89.3623, "matched_fragments": 1599, "total_fragments": 2152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora kobensis", "strain": "strain=ATCC 20501", "accession": "GCA_900108315.1", "taxid": 146035, "species_taxid": 146035, "relation_to_type": "type", "validated": true, "ani": 83.3639, "matched_fragments": 1274, "total_fragments": 2152, "ani_threshold": 95, "status": "below_threshold" }, { 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"bacillus_cell_shape": 0.833, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.166, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Saccharopolyspora", "karakumensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }