{ "type": "genome", "identifier": "GCF_004349265.1", "organism": "Dyadobacter psychrotolerans", "title": "Dyadobacter psychrotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyonggi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004349265.1", "bioproject": "PRJNA224116", "biosample": "SAMN11039070", "wgs_master": "SMFL00000000.1", "refseq_category": "reference genome", "taxid": "2541721", "species_taxid": "2541721", "organism_name": "Dyadobacter psychrotolerans", "infraspecific_name": "strain=AR-3-6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/13", "asm_name": "ASM434926v1", "asm_submitter": "Kyonggi University", "gbrs_paired_asm": "GCA_004349265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/349/265/GCF_004349265.1_ASM434926v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7925083", "genome_size_ungapped": "7925083", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004349265.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "6794", "protein_coding_gene_count": "6687", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-13", "dateModified": "2019-03-13", "datePublished": "2019-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyadobacter psychrotolerans" ], "sample_taxid": [ "2541721" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Svalbard: Jan Mayen" ], "sample_host_location_id": [], "data_size": "2.253 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7925083", "Number of Sequences": "44", "Longest Sequences (bp)": "930292", "N50 (bp)": "658079", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.1", "Number of CDSs": "6623", "Average Protein Length": "347.6", "Coding Ratio (%)": "87.1", "Number of rRNAs": "2", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dyadobacter psychrotolerans", "strain": "strain=AR-3-6", "accession": "GCA_004349265.1", "taxid": 2541721, "species_taxid": 2541721, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2612, "total_fragments": 2617, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dyadobacter psychrophilus", "strain": "strain=DSM 22270", "accession": "GCA_900167945.1", "taxid": 651661, "species_taxid": 651661, "relation_to_type": "type", "validated": true, "ani": 79.0031, "matched_fragments": 437, "total_fragments": 2617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter frigoris", "strain": "strain=AR-3-8", "accession": "GCA_005280585.1", "taxid": 2576211, "species_taxid": 2576211, "relation_to_type": "type", "validated": true, "ani": 78.8763, "matched_fragments": 521, "total_fragments": 2617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter flavalbus", "strain": "strain=NS28", "accession": "GCA_006149045.1", "taxid": 2579942, "species_taxid": 2579942, "relation_to_type": "type", "validated": true, "ani": 78.6501, "matched_fragments": 442, "total_fragments": 2617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sediminis", "strain": "strain=CGMCC 1.12895", "accession": "GCA_014640015.1", "taxid": 1493691, "species_taxid": 1493691, "relation_to_type": "type", "validated": true, "ani": 78.5485, "matched_fragments": 409, "total_fragments": 2617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter luteus", "strain": "strain=RS19", "accession": "GCA_003383615.1", "taxid": 2259619, "species_taxid": 2259619, "relation_to_type": "type", "validated": true, "ani": 78.4141, "matched_fragments": 538, "total_fragments": 2617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter koreensis", "strain": "strain=DSM 19938", "accession": "GCA_900108855.1", "taxid": 408657, "species_taxid": 408657, "relation_to_type": "type", "validated": true, "ani": 78.3501, "matched_fragments": 460, "total_fragments": 2617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter subterraneus", "strain": 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"GCA_014641595.1", "taxid": 1749036, "species_taxid": 1749036, "relation_to_type": "type", "validated": true, "ani": 77.0426, "matched_fragments": 308, "total_fragments": 2617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter jiangsuensis", "strain": "strain=DSM 29057", "accession": "GCA_003014695.1", "taxid": 1591085, "species_taxid": 1591085, "relation_to_type": "type", "validated": true, "ani": 76.9738, "matched_fragments": 300, "total_fragments": 2617, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004349265.1", "gtdb_species": "s__Dyadobacter psychrotolerans", "ani": 100.0, "matched_fragments": 2612, "total_fragments": 2617, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005860765.1", "gtdb_species": "s__Dyadobacter sediminis", "ani": 78.6678, "matched_fragments": 413, "total_fragments": 2617, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006149045.1", "gtdb_species": "s__Dyadobacter flavalbus", "ani": 78.636, "matched_fragments": 444, "total_fragments": 2617, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Dyadobacter", "psychrotolerans" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }