{
    "type": "genome",
    "identifier": "GCF_004352845.1",
    "organism": "Luteimonas terricola",
    "title": "Luteimonas terricola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Center for Disease Control and Prevention",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004352845.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11026467",
        "wgs_master": "SJRX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "645597",
        "species_taxid": "645597",
        "organism_name": "Luteimonas terricola",
        "infraspecific_name": "strain=BZ92r",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/15",
        "asm_name": "ASM435284v1",
        "asm_submitter": "Chinese Center for Disease Control and Prevention",
        "gbrs_paired_asm": "GCA_004352845.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/352/845/GCF_004352845.1_ASM435284v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3039636",
        "genome_size_ungapped": "3039636",
        "gc_percent": "69.500000",
        "replicon_count": "0",
        "scaffold_count": "20",
        "contig_count": "20",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004352845.1-RS_2024_05_06",
        "annotation_date": "2024-05-06",
        "total_gene_count": "2844",
        "protein_coding_gene_count": "2744",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-15",
    "dateModified": "2019-03-15",
    "datePublished": "2019-03-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Luteimonas terricola"
        ],
        "sample_taxid": [
            "645597"
        ],
        "sample_host_organism": [
            "not collected"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy: Bozen, South Tyrol"
        ],
        "sample_host_location_id": [],
        "data_size": "0.819 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3039636",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "1002475",
        "N50 (bp)": "611157",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.3",
        "Number of CDSs": "2813",
        "Average Protein Length": "330.0",
        "Coding Ratio (%)": "91.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Luteimonas terricola",
                "strain": "strain=BZ92r",
                "accession": "GCA_004352845.1",
                "taxid": 645597,
                "species_taxid": 645597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1005,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Luteimonas terricola",
                "strain": "strain=CGMCC 1.8985",
                "accession": "GCA_014645675.1",
                "taxid": 645597,
                "species_taxid": 645597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9944,
                "matched_fragments": 998,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Luteimonas arsenica",
                "strain": "strain=26-35",
                "accession": "GCA_004352825.1",
                "taxid": 1586242,
                "species_taxid": 1586242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0638,
                "matched_fragments": 757,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas padinae",
                "strain": "strain=KCTC 52403",
                "accession": "GCA_014652935.1",
                "taxid": 1714359,
                "species_taxid": 1714359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.386,
                "matched_fragments": 764,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas colneyensis",
                "strain": "strain=Sa2BVA3",
                "accession": "GCA_014836665.1",
                "taxid": 2762230,
                "species_taxid": 2762230,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3171,
                "matched_fragments": 758,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas granuli",
                "strain": "strain=Gr-4",
                "accession": "GCA_007795095.1",
                "taxid": 1176533,
                "species_taxid": 1176533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4509,
                "matched_fragments": 732,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas lumbrici",
                "strain": "strain=1.1416",
                "accession": "GCA_006476065.1",
                "taxid": 2559601,
                "species_taxid": 2559601,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5293,
                "matched_fragments": 530,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas aquatica",
                "strain": "strain=RIB1-20",
                "accession": "GCA_022662575.1",
                "taxid": 450364,
                "species_taxid": 450364,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4118,
                "matched_fragments": 596,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas weifangensis",
                "strain": "strain=WF-2",
                "accession": "GCA_003416885.1",
                "taxid": 2303539,
                "species_taxid": 2303539,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1356,
                "matched_fragments": 557,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas saliphila",
                "strain": "strain=SJ-9",
                "accession": "GCA_016774335.1",
                "taxid": 2804919,
                "species_taxid": 2804919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0239,
                "matched_fragments": 661,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas salinisoli",
                "strain": "strain=SJ-92",
                "accession": "GCA_013425525.1",
                "taxid": 2752307,
                "species_taxid": 2752307,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8304,
                "matched_fragments": 645,
                "total_fragments": 1006,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004352845.1",
                "gtdb_species": "s__Luteimonas terricola",
                "ani": 100.0,
                "matched_fragments": 1005,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004352825.1",
                "gtdb_species": "s__Luteimonas arsenica",
                "ani": 88.0873,
                "matched_fragments": 755,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014652935.1",
                "gtdb_species": "s__Luteimonas padinae",
                "ani": 87.3887,
                "matched_fragments": 763,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014836665.1",
                "gtdb_species": "s__Luteimonas sp014836665",
                "ani": 87.3248,
                "matched_fragments": 757,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016615955.1",
                "gtdb_species": "s__Luteimonas sp016615955",
                "ani": 86.9769,
                "matched_fragments": 759,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "98.78",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_007795095.1",
                "gtdb_species": "s__Luteimonas granuli",
                "ani": 86.4479,
                "matched_fragments": 733,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016615815.1",
                "gtdb_species": "s__Luteimonas sp016615815",
                "ani": 84.9194,
                "matched_fragments": 718,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "98.29",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014764385.1",
                "gtdb_species": "s__Luteimonas sp014212025",
                "ani": 84.7652,
                "matched_fragments": 714,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.36",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.188,
        "cell_length": 0.278,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 25.0,
        "optimum_ph": 7.0,
        "genome_size": 3559013.5,
        "gc_content": 68.5,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Luteimonas",
        "terricola"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}