{ "type": "genome", "identifier": "GCF_004352915.1", "organism": "Flavobacterium zhairuonense", "title": "Flavobacterium zhairuonense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004352915.1", "bioproject": "PRJNA224116", "biosample": "SAMN10983888", "wgs_master": "SJSY00000000.1", "refseq_category": "reference genome", "taxid": "2493631", "species_taxid": "2493631", "organism_name": "Flavobacterium zhairuonense", "infraspecific_name": "strain=A5.7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/15", "asm_name": "ASM435291v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_004352915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/352/915/GCF_004352915.1_ASM435291v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5245985", "genome_size_ungapped": "5245985", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004352915.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4467", "protein_coding_gene_count": "4381", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-15", "dateModified": "2019-03-15", "datePublished": "2019-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium zhairuonense" ], "sample_taxid": [ "2493631" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.457 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5245985", "Number of Sequences": "76", "Longest Sequences (bp)": "723307", "N50 (bp)": "429967", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.9", "Number of CDSs": "4315", "Average Protein Length": "346.0", "Coding Ratio (%)": "85.4", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium zhairuonense", "strain": "strain=A5.7", "accession": "GCA_004352915.1", "taxid": 2493631, "species_taxid": 2493631, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1724, "total_fragments": 1725, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium denitrificans", "strain": "strain=DSM 15936", "accession": "GCA_000425445.1", "taxid": 281361, "species_taxid": 281361, "relation_to_type": "type", "validated": true, "ani": 88.5809, "matched_fragments": 1333, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_009674815.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 87.7807, "matched_fragments": 1376, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_900182645.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 87.7452, "matched_fragments": 1366, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daemonense", "strain": "strain=JCM 19455", "accession": "GCA_007341385.1", "taxid": 1393049, "species_taxid": 1393049, "relation_to_type": "type", "validated": true, "ani": 86.3016, "matched_fragments": 1255, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nitrogenifigens", "strain": "strain=DSM 29982", "accession": "GCA_900182675.1", "taxid": 1617283, "species_taxid": 1617283, "relation_to_type": "type", "validated": true, "ani": 84.099, "matched_fragments": 1105, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nitrogenifigens", "strain": "strain=NXU-44", "accession": "GCA_003254565.1", "taxid": 1617283, "species_taxid": 1617283, "relation_to_type": "type", "validated": true, "ani": 84.0466, "matched_fragments": 1092, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sharifuzzamanii", "strain": "strain=A7.6", "accession": "GCA_003254585.1", "taxid": 2211133, "species_taxid": 2211133, "relation_to_type": "type", "validated": true, "ani": 83.9817, "matched_fragments": 1086, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=ATCC 17061", "accession": "GCA_002221975.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 83.6822, "matched_fragments": 1089, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium defluvii", "strain": "strain=DSM 17963", "accession": "GCA_900129555.1", "taxid": 370979, "species_taxid": 370979, "relation_to_type": "type", "validated": true, "ani": 83.6817, "matched_fragments": 1087, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 83.6711, "matched_fragments": 1113, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=DSM 2064", "accession": "GCA_900142355.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 83.6086, "matched_fragments": 1112, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 83.5582, "matched_fragments": 1054, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phragmitis", "strain": "strain=CGMCC 1.10370", "accession": "GCA_900112575.1", "taxid": 739143, "species_taxid": 739143, "relation_to_type": "type", "validated": true, "ani": 83.5542, "matched_fragments": 1089, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 83.4265, "matched_fragments": 1068, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 83.2988, "matched_fragments": 1079, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 77.6047, "matched_fragments": 234, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004352915.1", "gtdb_species": "s__Flavobacterium zhairuonense", "ani": 100.0, "matched_fragments": 1724, "total_fragments": 1725, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000425445.1", "gtdb_species": "s__Flavobacterium denitrificans", "ani": 88.5795, "matched_fragments": 1334, "total_fragments": 1725, "gtdb_taxonomy": 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